New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3666120 =183 (1.340)32 (0.280) 11/148 NT 18.5% intergenic (‑310/+60) gadX/gadA acid resistance regulon transcriptional activator; autoactivator/glutamate decarboxylase A, PLP‑dependent
?NC_000913 3666163 = 131 (1.160)intergenic (‑353/+17) gadX/gadA acid resistance regulon transcriptional activator; autoactivator/glutamate decarboxylase A, PLP‑dependent

GATCACCCGAAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3666233‑3666120
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgggcattcggttTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAG  >  NC_000913/3666163‑3666261
                                                                                                                                                                                                                     
GATCACCCGAAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAG                                                                                                                   >  2:939767/1‑100
GATCACCCGAAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAG                                                                                                                   >  1:3092455/1‑100
 ATCACCCGAAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGC                                                                                                                  <  1:1836102/100‑1
   CACCCGAAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTG                                                                                                                >  2:80247/1‑100
     CCCGAAACTGCAGGGTATTGCCCAGCAGAACATCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGG                                                                                                              <  1:279865/100‑1
     CCCGAAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGG                                                                                                              >  1:520603/1‑100
     CCCGAAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGG                                                                                                              >  2:925608/1‑100
     CCCGAAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGG                                                                                                              >  2:3704135/1‑100
     CCCGAAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGG                                                                                                              >  2:2379904/1‑100
      CCGAAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATATCGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGC                                                                                                             <  2:2799315/100‑1
       CGAAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCA                                                                                                            >  2:784973/1‑100
         AAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATT                                                                                                          <  2:1547038/100‑1
          AACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTC                                                                                                         <  1:2258583/100‑1
          AACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACAAAACGTTGTAAACACCGAATGCCCAGCCTTTAAAAAGACAGCTGGGCATTC                                                                                                         <  2:886825/100‑1
            CTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGG                                                                                                       >  2:2884981/1‑100
            CTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGG                                                                                                       >  2:1407877/1‑100
            CTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGG                                                                                                       <  1:2661058/100‑1
             TGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGT                                                                                                      >  1:264351/1‑100
             TGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGG                                                                                                       <  2:2494058/99‑1
              GCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTT                                                                                                     <  1:416347/100‑1
              GCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTT                                                                                                     >  1:1500480/1‑100
              GCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTT                                                                                                     >  1:2641780/1‑100
               CAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGatg                                                                                                    >  2:1664536/1‑97
                                       TTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCTTTTAAAAAAACAGTTGGGTATTCGGTTTTTACAACGTTATGTTATCAGGTG                                                                             >  2:2472979/1‑99
                                                    gatctCATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTT                                                               <  1:1431395/95‑1
                                                         CATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTagatc                                                          >  2:1431385/1‑95
                                                                     AAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCT                                              >  2:2791869/1‑100
                                                                     AAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGGTATCAGGTCAGTTTAAAGCTGTTCTGCTGGGCAATACCCT                                              >  2:1963108/1‑100
                                                                        ACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCA                                           >  1:2455829/1‑100
                                                                         CCGAATGCCCAGCGTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAG                                          >  1:2595355/1‑100
                                                                         CCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAG                                          >  1:2362341/1‑100
                                                                         CCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAG                                          >  1:2034241/1‑100
                                                                         CCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAG                                          >  1:1973824/1‑100
                                                                         CCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAG                                          >  2:925082/1‑100
                                                                         CCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAG                                          >  2:1172313/1‑100
                                                                         CCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACACTGCAG                                          >  2:1318042/1‑100
                                                                         CCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTACTGGGCAATACCCTGCAG                                          >  1:1485926/1‑100
                                                                          CGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGT                                         >  1:1148131/1‑100
                                                                           GAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTT                                        >  2:2197511/1‑100
                                                                            AATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTT                                       >  1:1088281/1‑100
                                                                             ATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTC                                      >  1:755767/1‑100
                                                                             ATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTC                                      >  1:660620/1‑100
                                                                              TGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCG                                     >  1:2768139/1‑100
                                                                               GCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGTCAATACCCTGCAGTTTCGG                                    >  2:565342/1‑100
                                                                               GCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGG                                    >  1:248527/1‑100
                                                                               GCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGG                                    >  1:2558804/1‑100
                                                                               GCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGG                                    >  1:682184/1‑100
                                                                               GCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGG                                    >  2:2259420/1‑100
                                                                               GCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGG                                    >  1:1959085/1‑100
                                                                               GCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGG                                    >  1:493428/1‑100
                                                                               GCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGG                                    >  1:124523/1‑100
                                                                               GCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGG                                    >  2:1134649/1‑100
                                                                                CCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGG                                   >  2:38261/1‑100
                                                                                CCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGG                                   >  2:3242/1‑100
                                                                                CCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGG                                   >  2:878288/1‑100
                                                                                                   GCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCA                <  1:3803120/100‑1
                                                                                                   GCTGGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCA                <  1:2108511/100‑1
                                                                                                      GGGCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGG             <  2:2631440/100‑1
                                                                                                        GCATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAG           <  2:2884845/100‑1
                                                                                                        GCATTCGGTTTTTACAACGTTACGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGATATATTTCACGGAG           >  2:218908/1‑100
                                                                                                         CATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGG          <  1:3587656/100‑1
                                                                                                         CATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGG          <  2:1841403/100‑1
                                                                                                         CATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGG          <  2:2868732/100‑1
                                                                                                         CATGCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGG          <  2:1058098/100‑1
                                                                                                          ATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGC         >  1:2096138/1‑100
                                                                                                          ATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGC         >  2:337293/1‑100
                                                                                                          ATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGC         <  1:3492204/100‑1
                                                                                                          ATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGC         <  1:43091/100‑1
                                                                                                          ATTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGCGATCGCTGAGATATTTCAGGGAGGC         <  1:1023046/100‑1
                                                                                                           TTCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCT        <  1:2472995/100‑1
                                                                                                            TCGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTT       <  1:2324485/100‑1
                                                                                                             CGGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTT      >  2:3332933/1‑100
                                                                                                              GGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTG     >  2:3208482/1‑100
                                                                                                              GGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTG     >  1:3316988/1‑100
                                                                                                              GGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTG     <  1:3368877/100‑1
                                                                                                              GGTTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTACTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTG     <  2:1485916/100‑1
                                                                                                                TTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTA   <  1:2645685/100‑1
                                                                                                                TTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTA   >  2:502136/1‑100
                                                                                                                TTTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTA   >  2:536464/1‑100
                                                                                                                 TTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAG  <  1:256129/100‑1
                                                                                                                 TTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAG  <  2:654393/100‑1
                                                                                                                 TTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAG  <  1:506778/100‑1
                                                                                                                 TTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAG  >  1:682651/1‑100
                                                                                                                                                                                                                     
GATCACCCGAAACTGCAGGGTATTGCCCAGCAGAACAGCTTTAAACACACCTGATAACATAACGTTGTAAAAACCGAATGCCCAGCCTTTAAAAAAACAGCTGGGCATTCGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3666233‑3666120
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgggcattcggttTTTACAACGTTATGTTATCAGGTGTGTTTAAAGCTGTTCTGCTGGGCAATACCCTGCAGTTTCGGGTGATCGCTGAGATATTTCAGGGAGGCTTTGTAG  >  NC_000913/3666163‑3666261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.