| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4476539 = | 143 (1.050) | 7 (0.050) | 7/172 | NT | 4.9% | coding (1103/1815 nt) | yjgL | SopA‑central‑domain‑like hexapeptide repeat protein |
| ? | NC_000913 | 4476562 = | 135 (1.020) | coding (1126/1815 nt) | yjgL | SopA‑central‑domain‑like hexapeptide repeat protein | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
CTTTATCTTTTTAGTATCATCAAAATATTGCATGCTTTTATTAAAACACCAATCCAGTATTCTTACATCATTAATATATGGGGATTTTGAAAAAGTCTCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4476639‑4476539‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaTATATTAATGATGTAAGAATACTGGATTGGTGTTTTAATAAAAGCATGCAATATTTTGATGATACTAAAAAGATAAAGCATGCATGCTCCGTAATAAA > NC_000913/4476562‑4476659 CTTTATCTTTTTAGTATCATCAAAATATTGCATGCTTTTATTAAAACACCAATCCAGTATTCTTACATCATTAATATATGGGGATTTTGAAAAAGTCTCC > 1:3214088/1‑100CTTTATCTTTTTAGTATCATCAAAATATTGCATGCTTTTATTAAAACACCAATCCAGTATTCTTACATCATTAATATATGGGGATTTTGAAAAAGTCTCC < 2:3605476/100‑1 TTTATCTTTTTAGTATCATCAAAATATTGCATGCTTTTATTAAAACACCAATCCAGTATTCTTACATCATTAATATATGGGGATTTTGAAAAAGTCTCCA < 2:2246964/100‑1 TTACATCATTAATATATGGGGATTTTGGAAAAGTCTCCAGATATTACTGATGTAAGAATACTGGATTGGTGTTTTAATAAAAGCATGCAATATTTTGATG > 1:93010/1‑100 TACATCATTAATATATGGGGATTTTGAAAAAGTCTCCATATATTAATGATGTAAGAATACTGGATTGGTGTTTTAATAAAAGCATGCAATATTTTGATGA > 1:859542/1‑100 ACATCATTAATATATGGGGATTTTGAAAAAGTCTCCATATATTAATGATGTAAGAATACTGGATTGGTGTTTTAATAAAAGCATGCAATATTTTGATGAT > 1:17291/1‑100 TCATTAATATATGGGGATTTTGAAAAAGTCTCCATATATTAATGATGTAAGAATACTGGATTGGTGTTTTAATAAAAGCATGCAATATTTTGATGATACT > 1:1150172/1‑100 CATTAATATATGGGGATTTTGAAAAAGTCTCCATATATTAATGATGTAAGAATACTGGATTGGTGTTTTAATAAAAGCATGCAATATTTTGATGATACTA > 2:1908451/1‑100 TAATATATGGGGATTTTGAAAAAGTCTCCATATATTAATGATGTAAGAATACTGGATTGGTGTTTTAATAAAAGCATGCAATATTTTGATGATACTAAAA > 1:2651185/1‑100 ATATGGGGATTTTGAAAAAGTCTCCATATATTAATGATGTAAGAATACTGGATTGGTGTTTTAATAAAAGCATGCAATATTTTGATGATACTAAAAAGAT > 1:1529419/1‑100 CCATATATTAATGATGTAAGAATACTGGATTGGTGTTTTAATAAAAGCATGCAATATTTTGATGATACTAAAAAGATAAAGCATGCATGCTCCGTAATAA < 1:3528758/100‑1 CATATATTAATGATGTAAGAATACTGGATTGGTGTTTTAATAAAAGCATGCAATATTTTGATGATACTAAAAAGATAAAGCATGCATGCTCCGTAATAAA > 1:3663180/1‑100 CATATATTAATGATGTAAGAATACTGGATTGGTGTTTTAATAAAAGCATGCAATATTTTGATGATACTAAAAAGATAAAGCATGCATGCTCCGTAATAAA < 1:3717871/100‑1 CATATATTAATGATGTAAGAATACTGGATTGGTGTTTTAATAAAAGCATGCAATATTTTGATGATACTAAAAAGATAAAGCATGCATGCTCCGTAATAAA < 2:1750100/100‑1 CTTTATCTTTTTAGTATCATCAAAATATTGCATGCTTTTATTAAAACACCAATCCAGTATTCTTACATCATTAATATATGGGGATTTTGAAAAAGTCTCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4476639‑4476539‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaTATATTAATGATGTAAGAATACTGGATTGGTGTTTTAATAAAAGCATGCAATATTTTGATGATACTAAAAAGATAAAGCATGCATGCTCCGTAATAAA > NC_000913/4476562‑4476659 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |