| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555370 | 165 (1.210) | 20 (0.170) | 9/158 | NT | 11.3% | intergenic (+21/+120) | uxuR/yjiC | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein |
| ? | NC_000913 | = 4555379 | 167 (1.380) | intergenic (+30/+111) | uxuR/yjiC | fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
ACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555262‑4555370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgcaaggAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCGTCAACGT < NC_000913/4555379‑4555282 ACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATA < 1:1455053/100‑1ACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATA < 2:1041838/100‑1 GTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAG < 2:3141200/100‑1 TCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGC < 2:2201468/100‑1 CTGCTGGTATTCTCGAACGTTGACGATATTTATTTTGATTGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCG < 2:500457/100‑1 CTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCG > 2:1936793/1‑100 CTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCG < 2:1718214/100‑1 GCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCA < 2:1698201/100‑1 CTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAA > 2:344074/1‑100 CTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAA > 1:288936/1‑100 TGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAG > 2:366297/1‑100 GGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGG > 2:577815/1‑100 GACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCG < 1:1514839/100‑1 ACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGC < 1:1929821/100‑1 ACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGC < 1:3366573/100‑1 CGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCT < 2:1331228/100‑1 CGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCT < 1:3443102/100‑1 GATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCTT < 1:1647790/100‑1 GATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCTT < 1:1846952/100‑1 GATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCTT < 2:1046902/100‑1 GATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCT < 2:1143906/99‑1 ATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCTTA < 1:3494722/100‑1 ATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCTTA < 1:3779045/100‑1 ATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCTTA < 1:3792182/100‑1 ATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCTTA < 1:3195953/100‑1 ATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCT < 2:2719426/98‑1 ATATTTATTTTGATGGCTATCTGTTGGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCTTA < 1:705721/100‑1 TATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCTTAT < 2:3522383/100‑1 TATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCTTATTATA < 1:77008/100‑1 TATTTTGATGGCTATCTGTTTGATTCATGGACGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCTTATTATA < 2:1093442/100‑1 CTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGC < 1:315723/100‑1 TATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGGAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGCG < 1:239662/100‑1 AGCGCAAGGAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCG > 1:2125026/1‑100 AGCGCAAGGAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCG > 1:2266519/1‑100 AGCGCAAGGAACGTTTACCCCTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAACCAAACAGATAGCCATCAAAATAAATATCG < 1:136753/100‑1 GCGCAAGGAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCGT < 2:1760938/100‑1 CGCAAGGAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCGTC > 1:527907/1‑100 CGCAAGGAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCGTC > 1:315464/1‑100 CGCAAGGAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCGTC > 2:731978/1‑100 GCAAGGAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCGTCA > 2:1635025/1‑100 GCAAGGAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCGTCA < 2:3590443/100‑1 GCAAGGAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCGTCA > 1:1080722/1‑100 GCAAGGAACGTCTACCCTTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCGTCA > 2:3800091/1‑100 CAAGGAACGTTTACCCTTGCGCTTATTATAATAATTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCGTC < 2:2201861/98‑1 CAAGGAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCGTCAn < 1:595601/100‑2 AAGGAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCGTCAAC < 1:630086/100‑1 AGGAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCGTCAACG < 1:2313733/100‑1 GGAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCGTCAACGT > 1:577821/1‑100 ACGTCTGCTGGAATTCTCGAACGTTGACGATATTTATTTTGATGGCTATCTGTTTGATTCATGGCCGCTGGATAAAGTCGACGCCTGACTTATTATAATAAGCGCAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555262‑4555370‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagcgcaaggAACGTTTACCCTTGCGCTTATTATAATAAGTCAGGCGTCGACTTTATCCAGCGGCCATGAATCAAACAGATAGCCATCAAAATAAATATCGTCAACGT < NC_000913/4555379‑4555282 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |