New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3555795 =	NA (NA)	4 (0.050)	5/162	NT	NA	intergenic (+5/+38)	malT/rtcA	mal regulon transcriptional activator/RNA 3'‑terminal phosphate cyclase
	?	NC_000913	3555821 =	NA (NA)					intergenic (+31/+12)	malT/rtcA	mal regulon transcriptional activator/RNA 3'‑terminal phosphate cyclase

GGAGCGTTTCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTATCCGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3555902‑3555795 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGT  >  NC_000913/3555821‑3555919                                                                                                                                                                                                                 GGAGCGTTTCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCT‑GCGCGTTA                                                                                                            >  2:1018752/1‑100  GAGCGTTTCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTA                                                                                                            <  2:776390/100‑1   AGCGTTTCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTAT                                                                                                           >  1:545882/1‑100    GCGTTTCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTATC                                                                                                          >  1:151653/1‑100     CGTTTCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTATCC                                                                                                         <  1:1788801/100‑1        TTCTTGTCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTATCCGGC                                                                                                      <  2:132722/100‑1        TTCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTATCCGGC                                                                                                      <  1:1654782/100‑1         TCTTGCCGGTGCGGTTTAGTTTGATAGACACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTATCCGGCT                                                                                                     <  1:69065/100‑1            TGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATAACGCGCCAGATCCGGCTTAC                                                                                                  <  1:663036/100‑1                              TGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAAT                                                                                <  1:2384868/100‑1                                                                               TGTAAGCCTGATCTGGCGCGTTATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGC                               >  1:261354/1‑100                                                                                 TAAGCCGGATCTGGCGCGTTATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAA                             >  1:39825/1‑100                                                                                  AAGCCGGATCTGGCGCGTTATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAG                            >  1:1698033/1‑100                                                                                                     ATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGA         <  1:382737/100‑1                                                                                                      TCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGAT        <  1:682644/100‑1                                                                                                       CCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATA       <  1:1001264/100‑1                                                                                                           CTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGG   <  1:2356709/100‑1                                                                                                           CTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGG   <  2:1142454/100‑1                                                                                                           CTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGG   <  2:1698024/100‑1                                                                                                            TTACATCTCTGCATCATTCAATGCTTATCCGCGTGACGCCATCTCTTTCTATCAAACTCAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGT  <  2:1242754/100‑1                                                                                                                                                                                                                 GGAGCGTTTCTTGCCGGTGCGGTTTAGTTTGATAGAAACAGATGGCGTAACGCGGGTGAGCATTGAATGATGCAGAGATGTAAGCCGGATCTGGCGCGTTATCCGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3555902‑3555795 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGT  >  NC_000913/3555821‑3555919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.