New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3555795 =NA (NA)4 (0.050) 5/162 NT NA intergenic (+5/+38) malT/rtcA mal regulon transcriptional activator/RNA 3'‑terminal phosphate cyclase
?NC_000913 3555821 = NA (NA)intergenic (+31/+12) malT/rtcA mal regulon transcriptional activator/RNA 3'‑terminal phosphate cyclase

Only 100 of 160 total aligned reads displayed.

TCCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGA  >  NC_000913/3555696‑3555894
                                                                                                   |                                                                                                   
tCCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTa                                                                                                     <  1:1256162/100‑1 (MQ=255)
 ccaatatcgcggtggtggagcgtttcttgccggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAg                                                                                                    <  2:1142454‑M1/2‑1 (MQ=255)
 ccaatatcgcggtggtggagcgtttcttgccggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAg                                                                                                    <  1:2356709‑M1/2‑1 (MQ=255)
 ccGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAg                                                                                                    >  1:555709/1‑100 (MQ=255)
  cGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGc                                                                                                   >  1:38564/1‑100 (MQ=255)
  cGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGc                                                                                                   >  2:143157/1‑100 (MQ=255)
  cGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGc                                                                                                   <  1:2146800/100‑1 (MQ=255)
   gCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGcc                                                                                                  <  2:1200252/100‑1 (MQ=255)
    cAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCg                                                                                                 <  1:2058088/100‑1 (MQ=255)
     tatcgcggtggtggagcgtttcttgccggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAGCCgg                                                                                                <  1:1001264‑M1/6‑1 (MQ=255)
     aaTCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCgg                                                                                                <  2:305958/100‑1 (MQ=255)
     aaTCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCgg                                                                                                <  2:446202/100‑1 (MQ=255)
      atcgcggtggtggagcgtttcttgccggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAGCCGGa                                                                                               <  1:682644‑M1/7‑1 (MQ=255)
       tcgcggtggtggagcgtttcttgccggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAGCCGGAt                                                                                              <  1:382737‑M1/8‑1 (MQ=255)
          gTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAAc                                                                                           <  1:18146/100‑1 (MQ=255)
          gTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAAc                                                                                           <  2:471538/100‑1 (MQ=255)
            aTCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAAcgc                                                                                         >  1:891057/1‑100 (MQ=255)
             tCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAAcgcg                                                                                        <  1:1920061/100‑1 (MQ=255)
               aGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGcc                                                                                      <  1:264634/100‑1 (MQ=255)
               aGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGcc                                                                                      >  1:2076320/1‑100 (MQ=255)
               aGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGGGTAAGTTTAGCCGGATAACGCGcc                                                                                      >  2:1632220/1‑100 (MQ=255)
                gAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCa                                                                                     <  1:599924/100‑1 (MQ=255)
                 aaaCTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAg                                                                                    <  2:1449225/100‑1 (MQ=255)
                    cTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATc                                                                                 <  1:2155009/100‑1 (MQ=255)
                      cGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCg                                                                               <  1:292863/100‑1 (MQ=255)
                       ggCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCgg                                                                              >  2:2293735/1‑100 (MQ=255)
                        gCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGc                                                                             <  2:472003/100‑1 (MQ=255)
                        gCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGc                                                                             <  1:77870/100‑1 (MQ=255)
                         cGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGCTCCGGCt                                                                            <  1:1369147/100‑1 (MQ=255)
                          gTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCtt                                                                           <  1:325038/100‑1 (MQ=255)
                          cttgccggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAGCCGGATAACGCGCCAGATCCGGCtt                                                                           >  1:1698033‑M1/74‑100 (MQ=255)
                           ttgccggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAGCCGGATAACGCGCCAGATCCGGCTTa                                                                          >  1:39825‑M1/73‑100 (MQ=255)
                            ggCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAAAGCGCCAGCTCCGGCTTa                                                                          >  2:923274/1‑99 (MQ=255)
                             gCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACa                                                                        <  1:2181755/100‑1 (MQ=255)
                              cccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTAc                                                                         <  2:1742343/98‑1 (MQ=255)
                              cccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACa                                                                        >  2:1855352/1‑99 (MQ=255)
                              cccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACAt                                                                       >  1:1887516/1‑100 (MQ=255)
                              cccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACAt                                                                       >  1:1828313/1‑100 (MQ=255)
                              cccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTCAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGGCAGATCCGGCGTACAt                                                                       >  2:2339449/1‑100 (MQ=255)
                               ccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACAtc                                                                      <  2:990804/100‑1 (MQ=255)
                                   cGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTg                                                                  <  2:205072/100‑1 (MQ=255)
                                   cGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTg                                                                  <  1:1921613/100‑1 (MQ=255)
                                   cGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTg                                                                  <  1:1880400/100‑1 (MQ=255)
                                   cGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTg                                                                  <  1:671485/100‑1 (MQ=255)
                                    gCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGc                                                                 >  1:1066883/1‑100 (MQ=255)
                                     ccAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGca                                                                >  1:651169/1‑100 (MQ=255)
                                     ccAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGCCCTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTCACATCTCTGca                                                                >  2:2148062/1‑100 (MQ=255)
                                       aGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcatc                                                              <  1:749704/100‑1 (MQ=255)
                                        ggATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGGCAGATCCGGCTTACATCTCTgcagca                                                             >  2:1650115/1‑100 (MQ=255)
                                           tGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTc                                                          >  1:1508595/1‑100 (MQ=255)
                                            gCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTc                                                          <  2:2435295/99‑1 (MQ=255)
                                             cGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCaa                                                        >  1:1438906/1‑100 (MQ=255)
                                              ggTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAAt                                                       <  2:298141/100‑1 (MQ=255)
                                              ggTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGCTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAAt                                                       >  2:2569004/1‑100 (MQ=255)
                                               gTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTCAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCCTCATTCAATg                                                      >  2:1842923/1‑100 (MQ=255)
                                               gTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATg                                                      <  2:2126550/100‑1 (MQ=255)
                                                tACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGc                                                     <  2:71721/100‑1 (MQ=255)
                                                  caacaCGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCCTTCAATGCTc                                                   >  2:984073/1‑100 (MQ=255)
                                                  caacaCGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTc                                                   >  1:1946555/1‑100 (MQ=255)
                                                       cGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcg                                              >  2:1404145/1‑100 (MQ=255)
                                                       cGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcg                                              <  2:984800/100‑1 (MQ=255)
                                                       cGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcg                                              >  1:95091/1‑100 (MQ=255)
                                                        gCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcgc                                             >  2:2356696/1‑100 (MQ=255)
                                                         cccAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcgcg                                            >  2:762831/1‑100 (MQ=255)
                                                             gCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTAc                                        <  1:2485106/100‑1 (MQ=255)
                                                               aaTTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGc                                      <  1:2462045/100‑1 (MQ=255)
                                                                  tGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCAt                                   >  2:1679215/1‑100 (MQ=255)
                                                                   gCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATc                                  <  2:1946545/100‑1 (MQ=255)
                                                                    cTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCt                                 >  2:2015197/1‑100 (MQ=255)
                                                                     tGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTg                                >  2:1085481/1‑100 (MQ=255)
                                                                     tGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTg                                <  2:884966/100‑1 (MQ=255)
                                                                      gAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGt                               >  1:267462/1‑100 (MQ=255)
                                                                        agttaatgGGGTACGGCGTGTAAGTTTAGCCGGTTAACGCGCCAGATCCGGC‑TACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                            <  1:1475723/95‑1 (MQ=255)
                                                                         gatgatGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                            >  2:2577257/1‑100 (MQ=255)
                                                                         gatgatGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                            <  2:2356197/100‑1 (MQ=255)
                                                                          atgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCt                           <  2:267459/100‑1 (MQ=255)
                                                                           tgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTa                          >  2:1300585/1‑100 (MQ=255)
                                                                           tgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTa                          >  1:1775321/1‑100 (MQ=255)
                                                                             atgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATc                        <  1:992938/100‑1 (MQ=255)
                                                                               ggggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCaa                      >  1:1727364/1‑100 (MQ=255)
                                                                                gggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGCTCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATcca                      >  2:643128/1‑97 (MQ=255)
                                                                                 ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                    <  2:197180/100‑1 (MQ=255)
                                                                                 ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                    <  2:1394869/100‑1 (MQ=255)
                                                                                 ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                    <  2:774604/100‑1 (MQ=255)
                                                                                  gTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACt                   <  1:1281834/100‑1 (MQ=255)
                                                                                   tACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTa                  >  2:2319952/1‑100 (MQ=255)
                                                                                    aCGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTaa                 >  2:875105/1‑100 (MQ=255)
                                                                                      ggCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAAc               <  2:2136019/100‑1 (MQ=255)
                                                                                      ggCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAAc               >  2:545879/1‑100 (MQ=255)
                                                                                        cGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCg             <  1:141543/100‑1 (MQ=255)
                                                                                         gtgtAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGc            >  2:2064729/1‑100 (MQ=255)
                                                                                            tAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCAcc         <  1:642426/100‑1 (MQ=255)
                                                                                               gTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGc      >  1:2600904/1‑100 (MQ=255)
                                                                                                tttAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCa     <  2:38564/100‑1 (MQ=255)
                                                                                                gtaAGCCGGATCTGGCGCGTTATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCa     <  1:663036‑M1/97‑1 (MQ=255)
                                                                                                 ttAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCaa    >  1:291214/1‑100 (MQ=255)
                                                                                                  tAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATGTGTTTCTAGCAAACTACACCGCACCGGCAAg   >  2:1758710/1‑100 (MQ=255)
                                                                                                  tAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAg   >  1:1813940/1‑100 (MQ=255)
                                                                                                  tAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAg   <  1:2343962/100‑1 (MQ=255)
                                                                                                   AGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTGTCTATCAAACTAAACCGCACCGGCAAGa  <  1:69065‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
TCCGCAATCTGTATCAGAAACTCGGCGTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGA  >  NC_000913/3555696‑3555894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.