New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3555795 =NA (NA)4 (0.050) 5/162 NT NA intergenic (+5/+38) malT/rtcA mal regulon transcriptional activator/RNA 3'‑terminal phosphate cyclase
?NC_000913 3555821 = NA (NA)intergenic (+31/+12) malT/rtcA mal regulon transcriptional activator/RNA 3'‑terminal phosphate cyclase

Only 100 of 150 total aligned reads displayed.

GTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTC  >  NC_000913/3555722‑3555920
                                                                                                   |                                                                                                   
gTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCtt                                                                                                     <  1:325038/100‑1 (MQ=255)
cttgccggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAGCCGGATAACGCGCCAGATCCGGCtt                                                                                                     >  1:1698033‑M1/74‑100 (MQ=255)
 ttgccggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAGCCGGATAACGCGCCAGATCCGGCTTa                                                                                                    >  1:39825‑M1/73‑100 (MQ=255)
  tgccggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaagccggataacgcgccagatccggctTAc                                                                                                   <  1:663036‑M2/3‑1 (MQ=255)
  ggCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCtt                                                                                                     >  2:99049/1‑98 (MQ=255)
  ggCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAAAGCGCCAGCTCCGGCTTa                                                                                                    >  2:923274/1‑99 (MQ=255)
   gccggtgcggtttagtttgatagaaacagatggcgtaacgcgggtgagcattgaatgatgcagagatgtaAGCCGGATAACGCGCCAGATCAGGCTTACa                                                                                                  >  1:261354‑M1/71‑100 (MQ=255)
   gCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGCAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACa                                                                                                  <  1:1829758/100‑1 (MQ=255)
    cccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTAc                                                                                                   <  2:1742343/98‑1 (MQ=255)
    cccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTCAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGGCAGATCCGGCGTACAt                                                                                                 >  2:2339449/1‑100 (MQ=255)
     ccATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACAtc                                                                                                <  2:990804/100‑1 (MQ=255)
       aTCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACAtctc                                                                                              <  1:386786/100‑1 (MQ=255)
         cGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTg                                                                                            <  1:1921613/100‑1 (MQ=255)
         cGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTg                                                                                            <  1:1880400/100‑1 (MQ=255)
          gCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGc                                                                                           >  1:1066883/1‑100 (MQ=255)
           ccAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGca                                                                                          <  2:9544/100‑1 (MQ=255)
           ccAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGca                                                                                          >  1:651169/1‑100 (MQ=255)
             aGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcatc                                                                                        <  1:1570231/100‑1 (MQ=255)
             aGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcatc                                                                                        <  1:749704/100‑1 (MQ=255)
              ggATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGGCAGATCCGGCTTACATCTCTgcagca                                                                                       >  2:1650115/1‑100 (MQ=255)
                 tGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGcatcat                                                                                      <  1:1810055/98‑1 (MQ=255)
                   cGGTACAAGACGCCCAGCAATTGCTGAAGATGATGGGGTACGGTGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCGTCATTCaa                                                                                  <  2:1805950/100‑1 (MQ=255)
                   cGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCaa                                                                                  >  1:1438906/1‑100 (MQ=255)
                   cGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCaa                                                                                  >  1:283329/1‑100 (MQ=255)
                    ggTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAAt                                                                                 <  2:298141/100‑1 (MQ=255)
                    ggTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGCTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAAt                                                                                 >  2:2569004/1‑100 (MQ=255)
                     gTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTCAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCCTCATTCAATg                                                                                >  2:1842923/1‑100 (MQ=255)
                      tACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGc                                                                               <  2:71721/100‑1 (MQ=255)
                        caacaCGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCCTTCAATGCTc                                                                             >  2:984073/1‑100 (MQ=255)
                        caacaCGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTc                                                                             >  1:1946555/1‑100 (MQ=255)
                          acacGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCCTTCAAGGCTc                                                                             >  2:2129378/1‑98 (MQ=255)
                             cGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcg                                                                        >  1:95091/1‑100 (MQ=255)
                              gCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcgc                                                                       >  2:2356696/1‑100 (MQ=255)
                               cccAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcgcg                                                                      >  2:762831/1‑100 (MQ=255)
                               cccAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCcgcg                                                                      >  1:676181/1‑100 (MQ=255)
                                 cAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGtt                                                                    <  1:570265/100‑1 (MQ=255)
                                  agaaagtGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGGGCCAGATCCGGCTTACATCGCTGCATCATTCAAGGCTCACCCGCGt                                                                     <  2:797557/92‑1 (MQ=255)
                                   gCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTAc                                                                  <  1:2485106/100‑1 (MQ=255)
                                     aaTTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGc                                                                <  1:2462045/100‑1 (MQ=255)
                                      aTTGCTGAAGATGAGGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGcc                                                               <  2:2219261/100‑1 (MQ=255)
                                        tGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCAt                                                             >  2:1679215/1‑100 (MQ=255)
                                         gCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATc                                                            <  2:1946545/100‑1 (MQ=255)
                                          cTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCt                                                           >  2:2015197/1‑100 (MQ=255)
                                           tGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTg                                                          >  2:1085481/1‑100 (MQ=255)
                                           tGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTg                                                          <  2:884966/100‑1 (MQ=255)
                                           tGAAGATGATGGGATACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTg                                                          >  2:1613421/1‑100 (MQ=255)
                                            gAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGt                                                         >  1:267462/1‑100 (MQ=255)
                                             aaGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGtt                                                        <  1:2052101/100‑1 (MQ=255)
                                              agttaatgGGGTACGGCGTGTAAGTTTAGCCGGTTAACGCGCCAGATCCGGC‑TACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                                                      <  1:1475723/95‑1 (MQ=255)
                                               gatgatGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                                                      <  1:1713092/100‑1 (MQ=255)
                                                atgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                                                      <  2:2495020/99‑1 (MQ=255)
                                                atgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTc                                                      >  2:55247/1‑99 (MQ=255)
                                                atgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCt                                                     <  2:267459/100‑1 (MQ=255)
                                                 tgatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTa                                                    <  1:182103/100‑1 (MQ=255)
                                                  gatgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATGTGTTTCTAt                                                   >  2:2343949/1‑100 (MQ=255)
                                                    tgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCa                                                 <  2:1416397/100‑1 (MQ=255)
                                                    tgGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCa                                                 <  1:2216231/100‑1 (MQ=255)
                                                    attgaatgatgcagagatgtaAGCCGGATCTGGCGCGTTATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCa                                                 <  1:2384868‑M1/79‑1 (MQ=255)
                                                     ggggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCaa                                                >  1:1727364/1‑100 (MQ=255)
                                                     ggggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCaa                                                >  1:189021/1‑100 (MQ=255)
                                                      gggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGCTCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATcca                                                >  2:643128/1‑97 (MQ=255)
                                                      gggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCaaa                                               <  1:970939/100‑1 (MQ=255)
                                                       ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                                              <  2:774604/100‑1 (MQ=255)
                                                       ggTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAAc                                              <  2:1394869/100‑1 (MQ=255)
                                                        gTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACt                                             <  1:1281834/100‑1 (MQ=255)
                                                          aCGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTaa                                           >  2:875105/1‑100 (MQ=255)
                                                           cGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTaaa                                          >  2:532637/1‑100 (MQ=255)
                                                            ggCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAAc                                         <  1:298356/100‑1 (MQ=255)
                                                            ggCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAAc                                         <  2:2136019/100‑1 (MQ=255)
                                                               gtgtAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGc                                      >  2:2064729/1‑100 (MQ=255)
                                                                  tAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCAcc                                   <  2:2602077/100‑1 (MQ=255)
                                                                  tAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCAcc                                   <  1:642426/100‑1 (MQ=255)
                                                                    aGTTTAGTCGGATAACGCGCGAGATCCGGCCTACCACTCTGCATCGTACAATGCCCCCCCGCCCGACGCCATCTGTTTCTATCAAAcaacac                                         >  2:2434678/1‑87 (MQ=255)
                                                                    aGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCgg                                 >  2:2298873/1‑100 (MQ=255)
                                                                    aGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCgg                                 <  2:2016874/100‑1 (MQ=255)
                                                                     gTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGc                                <  1:1374000/100‑1 (MQ=255)
                                                                     gTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGc                                >  1:2600904/1‑100 (MQ=255)
                                                                     gTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCACACCGGc                                >  2:1965400/1‑100 (MQ=255)
                                                                      gtaAGCCGGATCTGGCGCGTTATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCa                               <  1:663036‑M1/97‑1 (MQ=255)
                                                                         AGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTGTCTATCAAACTAAACCGCACCGGCAAGa                            <  1:69065‑M1/100‑1 (MQ=255)
                                                                          GCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGaa                           <  1:1654782‑M1/100‑1 (MQ=255)
                                                                          GCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGACAAGaa                           <  2:132722‑M1/100‑1 (MQ=255)
                                                                             GGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACg                        <  1:1788801‑M1/100‑1 (MQ=255)
                                                                              GATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGc                       >  1:151653‑M1/1‑100 (MQ=255)
                                                                                TAACGCGC‑AGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTcc                    >  2:1018752‑M1/1‑100 (MQ=255)
                                                                                 aaCGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTcc                    >  1:558533/1‑100 (MQ=255)
                                                                                   cgcgCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTccac                  >  2:382733/1‑100 (MQ=255)
                                                                                   cgcgCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTccac                  >  2:2109276/1‑100 (MQ=255)
                                                                                      gcCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCcaccac               >  2:708987/1‑100 (MQ=255)
                                                                                      gcCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTGACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCcaccac               <  2:494320/100‑1 (MQ=255)
                                                                                       ccAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCaccacc              <  1:2281052/100‑1 (MQ=255)
                                                                                            tccggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGat         <  1:682644‑M2/93‑1 (MQ=255)
                                                                                             ccggctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGata        <  1:1001264‑M2/94‑1 (MQ=255)
                                                                                                 ctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTgg    <  1:2356709‑M2/98‑1 (MQ=255)
                                                                                                 ctTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTgg    <  2:1142454‑M2/98‑1 (MQ=255)
                                                                                                  tTACATCTCTGCATCATTCAATGCTTATCCGCGTGACGCCATCTCTTTCTATCAAACTCAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGt   <  2:1242754‑M2/99‑1 (MQ=255)
                                                                                                   tACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTc  <  2:1727355/100‑1 (MQ=255)
                                                                                                   tACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTc  >  1:459456/1‑100 (MQ=255)
                                                                                                   tACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTc  <  1:1823060/100‑1 (MQ=255)
                                                                                                   tACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTc  <  1:500747/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GTGGCCCATCGCCAGGATGCGGTACAACACGCCCAGCAATTGCTGAAGATGATGGGGTACGGCGTGTAAGTTTAGCCGGATAACGCGCCAGATCCGGCTTACATCTCTGCATCATTCAATGCTCACCCGCGTTACGCCATCTGTTTCTATCAAACTAAACCGCACCGGCAAGAAACGCTCCACCACCGCGATATTGGTC  >  NC_000913/3555722‑3555920

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.