| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4415961 | NA (NA) | 14 (0.160) | 9/166 | NT | NA | noncoding (4/34 nt) | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 4415991 | NA (NA) | noncoding (34/34 nt) | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP332 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4415864‑4415961‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACACT < NC_000913/4415991‑4415888 TTTATTGCTGCGTGCGACGGGGGGAGTGTGTGTGTAAGCGTAAACGACTGATGCGACCCTGGTTTCGATTCACTAAATGAAATATGTGAAAATTGTAGGC < 2:1574990/100‑1TTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGG < 2:2599342/99‑1TTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATCGTAGGC > 2:1883965/1‑100 TATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCG > 1:129519/1‑100 agtggTGCGGGCGACGGGGGCAGTGTGTTTGTAAGCGTATACTACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGG < 2:2223251/95‑1 ATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGG < 2:121934/100‑1 ATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGG < 1:765283/100‑1 GACGGGGGGAGTGTGCGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAG < 1:2568735/100‑1 GTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCC < 1:1667851/100‑1 GTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGACAAGGCGCGAGCGCCTTGTCC < 1:1158073/100‑1 TGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGC < 1:1238372/100‑1 TGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGC < 1:467453/100‑1 TGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGC < 1:1562515/100‑1 TGTGTGTAAGCGTATACGACTGATGCGACGCGGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGGCCGGC < 1:2013232/100‑1 TGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCT < 2:1566674/100‑1 TGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTAC < 1:2018371/100‑1 TAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAA < 2:1203789/100‑1 AAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAAT < 2:1974221/100‑1 AAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAAT < 1:1334037/100‑1 ACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACAT < 1:1296398/100‑1 TGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATCGTAGGCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCAT < 2:1663391/99‑1 GCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACA < 2:197050/100‑1 CCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACAC < 1:720835/100‑1 CGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACA > 1:1493907/1‑100 GATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACACT < 2:136720/100‑1 TTTATTGCTGCGGGCGACGGGGGGAGTGTGTGTGTAAGCGTATACGACTGATGCGACGCTGGTTTCGATTAACTAAATGAAATATGTGAAAATTGTAGgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4415864‑4415961‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGGCGCGAGCGCCTTGTCCGGCCTACAATTTTCACATATTTCATTTAGTTAATCGAAACCAGCGTCGCATCAGTCGTATACGCTTACACACACACT < NC_000913/4415991‑4415888 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |