New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2700568	67 (0.900)	6 (0.100)	5/160	9.7	10.3%	intergenic (‑371/+50)	shoB/acpS	toxic membrane protein/holo‑[acyl‑carrier‑protein] synthase 1
	?	NC_000913	= 2700581	51 (0.850)					intergenic (‑384/+37)	shoB/acpS	toxic membrane protein/holo‑[acyl‑carrier‑protein] synthase 1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

AGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCC  >  NC_000913/2700469‑2700666                                                                                                    |                                                                                                   aGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCg                                                                                                    <  2:851444/100‑1 (MQ=255) aGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCg                                                                                                    <  2:584091/100‑1 (MQ=255) aGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCg                                                                                                    <  1:1464543/100‑1 (MQ=255)   aTTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGtt                                                                                                  <  1:1439574/100‑1 (MQ=255)    ttGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTc                                                                                                 <  2:1657674/100‑1 (MQ=255)    ttGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCACCGt                                                                                                   >  2:1773750/1‑98 (MQ=255)     tGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTcc                                                                                                <  2:256728/100‑1 (MQ=255)       cAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCtt                                                                                              <  1:1141490/100‑1 (MQ=255)        aaGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTa                                                                                             <  2:436435/100‑1 (MQ=255)         aGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTAc                                                                                            >  1:202181/1‑100 (MQ=255)           ttGCTTGTAAAAGATAAGTACACTTATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAATTTAAAGTTAAAAAGTAAAACCCCCGTTCCtt                                                                                              <  1:856971/96‑1 (MQ=255)            tGCTTGTAATAGATAAGTACACTGGTCCATAATCGCTCTTGTTGAGGTTGCATGCTGCACAAAATTTATGTTATAAAGTAAAAACCCCGTGCCTTACCAg                                                                                         <  1:570405/100‑1 (MQ=255)            tGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAg                                                                                         >  2:786708/1‑100 (MQ=255)            tGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAg                                                                                         >  2:1172015/1‑100 (MQ=255)              cTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGtt                                                                                       >  2:1419874/1‑100 (MQ=255)                tGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCg                                                                                     <  2:1273329/100‑1 (MQ=255)                 gTAAAAGCTAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGATAAAAAGTAAAACCCCCGTTCCTTACCAGTTCgg                                                                                    >  1:955828/1‑100 (MQ=255)                 gTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCgg                                                                                    >  1:826790/1‑100 (MQ=255)                 gTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCg                                                                                     >  2:1203169/1‑99 (MQ=255)                  tAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCggg                                                                                   <  2:50984/100‑1 (MQ=255)                  tAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATAAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCggg                                                                                   >  2:25242/1‑100 (MQ=255)                    aaaGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCggggg                                                                                 <  1:635115/100‑1 (MQ=255)                       gATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGttt                                                                              <  2:380305/100‑1 (MQ=255)                        aTAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGtttt                                                                             <  2:1136301/100‑1 (MQ=255)                            gTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAATAAAACCCCCGTTCCTTACAAGTTCGGGGGTTTTACtt                                                                         >  2:558343/1‑100 (MQ=255)                             taaaatGATCCATAATCGCTGTTGTTGAGGTTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCTGTTCTTTACCAGTTCGTGGGTTTTACttt                                                                        <  1:1519665/95‑1 (MQ=255)                               cacTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACttttt                                                                      >  1:609500/1‑100 (MQ=255)                               cacTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACtttt                                                                       >  2:1072114/1‑99 (MQ=255)                                 cTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTaa                                                                    <  1:1653759/100‑1 (MQ=255)                                  tGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTaaa                                                                   <  1:358180/100‑1 (MQ=255)                                   gATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAag                                                                  >  2:535521/1‑100 (MQ=255)                                   gATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAag                                                                  <  2:1481246/100‑1 (MQ=255)                                      ccATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAgaga                                                               >  1:1778877/1‑100 (MQ=255)                                       cATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGaa                                                              >  1:345764/1‑100 (MQ=255)                                        aTAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAAc                                                             <  2:766503/100‑1 (MQ=255)                                          aaTCGCTGTTGTTGAGGGTGCATGCTGCACCAAATTAACGTTAAAAAATAAAACCCCCGTTACTTACCAGATCAAGGGTTTTACTAATTAAAaacaac                                                             >  2:148703/1‑98 (MQ=255)                                             cGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGtat                                                        <  2:1416421/100‑1 (MQ=255)                                                  ttgttgAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTattatt                                                    >  2:730866/1‑99 (MQ=255)                                                   tgttgAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGtattat                                                     >  2:1511121/1‑97 (MQ=255)                                                    gttgAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTAttttt                                                 >  2:1332918/1‑100 (MQ=255)                                                      tgAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTaa                                               >  1:1065130/1‑100 (MQ=255)                                                       gAGTGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAAc                                              <  1:759192/100‑1 (MQ=255)                                                             gCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCaa                                        <  2:591466/100‑1 (MQ=255)                                                              cATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCaat                                       <  2:86749/100‑1 (MQ=255)                                                               aTGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCaata                                      >  1:532663/1‑100 (MQ=255)                                                                 gctgcACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCaataat                                    >  1:425300/1‑100 (MQ=255)                                                                  ctgcACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAAtt                                   >  1:1761109/1‑100 (MQ=255)                                                                   tgcACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTa                                  >  2:377335/1‑100 (MQ=255)                                                                    gcACAATATTAAAGTTAAAAAATAAAACACCAGTTCCTTACCAGTACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTAc                                 >  1:449911/1‑100 (MQ=255)                                                                       caAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCg                               >  1:212036/1‑99 (MQ=255)                                                                            ttAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGcac                         >  1:762104/1‑100 (MQ=255)                                                                            ttAAAGTTAAAAAGTAAAACCCACGTTACTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGcac                         >  1:367398/1‑100 (MQ=255)                                                                             tAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGcaca                        >  2:107436/1‑100 (MQ=255)                                                                             tAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGcaca                        <  2:1606820/100‑1 (MQ=255)                                                                               aaGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAg                      <  1:1172004/100‑1 (MQ=255)                                                                               aaGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAg                      <  2:309610/100‑1 (MQ=255)                                                                                aGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGc                     <  2:1319327/100‑1 (MQ=255)                                                                                 gTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCa                    >  1:1363517/1‑100 (MQ=255)                                                                                 gTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCa                    >  2:870300/1‑100 (MQ=255)                                                                                   tcaaaaGTAAAACGCCCGTTCCTTACCAGTTAGGGGGTTTTAGTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATa                  >  2:1228795/3‑100 (MQ=255)                                                                                   tAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATa                  >  2:1387673/1‑100 (MQ=255)                                                                                    aaaaaGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAg                 <  2:695044/100‑1 (MQ=255)                                                                                    aaaaaGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAg                 <  1:1039675/100‑1 (MQ=255)                                                                                    aaaaaGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACAATCAATAATTACCGTGGCACAAGCATa                  >  2:675320/1‑99 (MQ=255)                                                                                      aaaGTAAATCCCCCGTTCCTTACCAGTTCGGTGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTg               <  2:1691122/100‑1 (MQ=255)                                                                                      aaaGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTg               <  2:662200/100‑1 (MQ=255)                                                                                        aGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGcc             >  1:192913/1‑100 (MQ=255)                                                                                           aaaaCCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCt          <  1:1332908/100‑1 (MQ=255)                                                                                              aCCCCCGTTCCTTACCAGTTTGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCa        <  1:301988/99‑1 (MQ=255)                                                                                                   cGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGcc  <  1:729796/100‑1 (MQ=255)                                                                                                    |                                                                                                   AGATTGCAAGTTGCTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCC  >  NC_000913/2700469‑2700666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.