New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2700568	67 (0.900)	6 (0.100)	5/160	9.7	10.3%	intergenic (‑371/+50)	shoB/acpS	toxic membrane protein/holo‑[acyl‑carrier‑protein] synthase 1
	?	NC_000913	= 2700581	51 (0.850)					intergenic (‑384/+37)	shoB/acpS	toxic membrane protein/holo‑[acyl‑carrier‑protein] synthase 1
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

CTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATG  >  NC_000913/2700482‑2700677                                                                                                    |                                                                                                 cTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGtt                                                                                                  >  2:1419874/1‑100 (MQ=255)   tGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCg                                                                                                <  2:1273329/100‑1 (MQ=255)    gTAAAAGCTAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGATAAAAAGTAAAACCCCCGTTCCTTACCAGTTCgg                                                                                               >  1:955828/1‑100 (MQ=255)    gTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCgg                                                                                               >  1:826790/1‑100 (MQ=255)    gTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCg                                                                                                >  2:1203169/1‑99 (MQ=255)     tAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCggg                                                                                              <  2:50984/100‑1 (MQ=255)     tAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATAAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCggg                                                                                              >  2:25242/1‑100 (MQ=255)       aaaGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCggggg                                                                                            <  1:635115/100‑1 (MQ=255)          gATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGttt                                                                                         <  2:380305/100‑1 (MQ=255)           aTAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGtttt                                                                                        <  2:1136301/100‑1 (MQ=255)               gTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAATAAAACCCCCGTTCCTTACAAGTTCGGGGGTTTTACtt                                                                                    >  2:558343/1‑100 (MQ=255)                taaaatGATCCATAATCGCTGTTGTTGAGGTTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCTGTTCTTTACCAGTTCGTGGGTTTTACttt                                                                                   <  1:1519665/95‑1 (MQ=255)                  cacTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACttttt                                                                                 >  1:609500/1‑100 (MQ=255)                  cacTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACtttt                                                                                  >  2:1072114/1‑99 (MQ=255)                    cTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTaa                                                                               <  1:1653759/100‑1 (MQ=255)                     tGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTaaa                                                                              <  1:358180/100‑1 (MQ=255)                      gATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAag                                                                             >  2:535521/1‑100 (MQ=255)                      gATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAag                                                                             <  2:1481246/100‑1 (MQ=255)                         ccATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAgaga                                                                          >  1:1778877/1‑100 (MQ=255)                          cATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGaa                                                                         >  1:345764/1‑100 (MQ=255)                           aTAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAAc                                                                        <  2:766503/100‑1 (MQ=255)                             aaTCGCTGTTGTTGAGGGTGCATGCTGCACCAAATTAACGTTAAAAAATAAAACCCCCGTTACTTACCAGATCAAGGGTTTTACTAATTAAAaacaac                                                                        >  2:148703/1‑98 (MQ=255)                                cGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGtat                                                                   <  2:1416421/100‑1 (MQ=255)                                     ttgttgAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTattatt                                                               >  2:730866/1‑99 (MQ=255)                                      tgttgAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGtattat                                                                >  2:1511121/1‑97 (MQ=255)                                       gttgAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTAttttt                                                            >  2:1332918/1‑100 (MQ=255)                                         tgAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTaa                                                          >  1:1065130/1‑100 (MQ=255)                                          gAGTGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAAc                                                         <  1:759192/100‑1 (MQ=255)                                                gCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCaa                                                   <  2:591466/100‑1 (MQ=255)                                                 cATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCaat                                                  <  2:86749/100‑1 (MQ=255)                                                  aTGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCaata                                                 >  1:532663/1‑100 (MQ=255)                                                    gctgcACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCaataat                                               >  1:425300/1‑100 (MQ=255)                                                     ctgcACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAAtt                                              >  1:1761109/1‑100 (MQ=255)                                                      tgcACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTa                                             >  2:377335/1‑100 (MQ=255)                                                       gcACAATATTAAAGTTAAAAAATAAAACACCAGTTCCTTACCAGTACGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTAc                                            >  1:449911/1‑100 (MQ=255)                                                          caAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCg                                          >  1:212036/1‑99 (MQ=255)                                                               ttAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGcac                                    >  1:762104/1‑100 (MQ=255)                                                               ttAAAGTTAAAAAGTAAAACCCACGTTACTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGcac                                    >  1:367398/1‑100 (MQ=255)                                                                tAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGcaca                                   <  2:1606820/100‑1 (MQ=255)                                                                tAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGcaca                                   >  2:107436/1‑100 (MQ=255)                                                                  aaGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAg                                 <  1:1172004/100‑1 (MQ=255)                                                                  aaGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAg                                 <  2:309610/100‑1 (MQ=255)                                                                   aGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGc                                <  2:1319327/100‑1 (MQ=255)                                                                    gTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCa                               >  2:870300/1‑100 (MQ=255)                                                                    gTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCa                               >  1:1363517/1‑100 (MQ=255)                                                                      tcaaaaGTAAAACGCCCGTTCCTTACCAGTTAGGGGGTTTTAGTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATa                             >  2:1228795/3‑100 (MQ=255)                                                                      tAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATa                             >  2:1387673/1‑100 (MQ=255)                                                                       aaaaaGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAg                            <  2:695044/100‑1 (MQ=255)                                                                       aaaaaGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAg                            <  1:1039675/100‑1 (MQ=255)                                                                       aaaaaGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACAATCAATAATTACCGTGGCACAAGCATa                             >  2:675320/1‑99 (MQ=255)                                                                         aaaGTAAATCCCCCGTTCCTTACCAGTTCGGTGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTg                          <  2:1691122/100‑1 (MQ=255)                                                                         aaaGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTg                          <  2:662200/100‑1 (MQ=255)                                                                           aGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGcc                        >  1:192913/1‑100 (MQ=255)                                                                              aaaaCCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCt                     <  1:1332908/100‑1 (MQ=255)                                                                                 aCCCCCGTTCCTTACCAGTTTGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCa                   <  1:301988/99‑1 (MQ=255)                                                                                      cGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGcc             <  1:729796/100‑1 (MQ=255)                                                                                         tCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGc          <  1:1072104/100‑1 (MQ=255)                                                                                          ccTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCg         <  1:107436/100‑1 (MQ=255)                                                                                           cTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTTATTAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGGGt        >  1:49620/1‑100 (MQ=255)                                                                                             tACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTa      >  1:1224565/1‑100 (MQ=255)                                                                                             tACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTa      <  2:310839/100‑1 (MQ=255)                                                                                              aCCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTAc     <  1:434634/100‑1 (MQ=255)                                                                                              aCCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTAc     <  1:903503/100‑1 (MQ=255)                                                                                               ccAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACa    >  2:1441307/1‑100 (MQ=255)                                                                                                cAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACAt   <  2:543614/100‑1 (MQ=255)                                                                                                 aGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATg  <  1:67802/100‑1 (MQ=255)                                                                                                    |                                                                                                 CTTGTAAAAGATAAGTACACTGATCCATAATCGCTGTTGTTGAGGGTGCATGCTGCACAAAATTAAAGTTAAAAAGTAAAACCCCCGTTCCTTACCAGTTCGGGGGTTTTACTTTTTAAAGAGAACGGTATTATTTTTAACTTTCAATAATTACCGTGGCACAAGCATAGTGCCGCTCATCTGCCAGCGTTACATG  >  NC_000913/2700482‑2700677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.