| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 380,020 | (G)10→7 | intergenic (‑139/+47) | frmR ← / ← yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 380016 = | 2 (0.030) | 65 (0.940) | 49/184 | 0.5 | 97.1% | intergenic (‑135/+53) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| ? | NC_000913 | = 380012 | 2 (0.030) | intergenic (‑131/+57) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein | |||||
ATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACC > NC_000913/379913‑380107 | ataGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGaaa > 2:1126289/1‑100 (MQ=255) tAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAg < 2:81239‑M2/100‑2 (MQ=255) aGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgg < 1:753044‑M2/100‑3 (MQ=255) ggggggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggg < 1:34742‑M2/100‑4 (MQ=255) ggggggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAggg < 2:720197‑M2/100‑4 (MQ=255) ggggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggg < 2:951447‑M2/99‑5 (MQ=255) ggggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgaggg < 2:785373‑M2/100‑6 (MQ=255) gggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggg < 2:1779983‑M2/100‑7 (MQ=255) gTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggc < 2:1235422‑M2/100‑9 (MQ=255) tATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggct > 2:1481123‑M2/1‑91 (MQ=255) tATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggct > 2:770518‑M2/1‑91 (MQ=255) tATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggct < 2:2588‑M2/100‑10 (MQ=255) aTTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggcta < 1:1234098‑M2/100‑11 (MQ=255) aTTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggcta < 1:612625‑M2/100‑11 (MQ=255) tCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaat < 2:980252‑M2/100‑13 (MQ=255) cTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatc > 1:1779970‑M2/1‑87 (MQ=255) cTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGAAAAACAAAGAGGAAAggaggggctaatc < 2:516169‑M2/100‑14 (MQ=255) tataTGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGGGGTCGTAAAACAAAGAGGAAAgggggggctaatcg < 1:97818‑M2/100‑15 (MQ=255) ccgatctatGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggc > 2:490422‑M2/5‑84 (MQ=255) tGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcag < 1:1052999‑M2/100‑19 (MQ=255) tccgatcttacccccctATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcaggg > 1:1610626‑M2/9‑80 (MQ=255) tagaataccCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaag > 2:1653013‑M2/5‑77 (MQ=255) aTGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagatcgg < 1:490419‑M2/100‑24 (MQ=255) gCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggc > 1:1331375‑M2/1‑75 (MQ=255) cATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggcc > 1:742334‑M2/1‑74 (MQ=255) aTACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccg < 1:1704657‑M2/100‑28 (MQ=255) tACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGGAACCAAAGACGAAAgggggggctaatcggcagggaaggccgc < 1:1273717‑M2/100‑29 (MQ=255) tACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggagatcgga < 2:1610637‑M2/100‑29 (MQ=255) tACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgc > 2:725816‑M2/1‑72 (MQ=255) aCCCCGCTATAGTATATAACACTGGAGAATAAGATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgcc > 2:903159‑M2/1‑71 (MQ=255) ccccccTATAGTATATAACACTGGCGAATAGAAGTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAA‑‑‑GAGGGATCTAATCGGCAGGGAAGCCAGccc > 1:1197263/1‑100 (MQ=255) ccccccTATAGTATATAACACTGGAGAATATAAGTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcaggtaaggccgccc < 1:1197258‑M2/100‑31 (MQ=255) ccccccTATAGTATATAACACTGGAGAATAGAAGTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccc < 1:1197264‑M2/100‑31 (MQ=255) ccccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccc < 1:839369‑M2/100‑31 (MQ=255) ccccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggcgctaatcggcagggaaggccgccc < 1:67473‑M2/100‑31 (MQ=255) ccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccg < 2:1375573‑M2/100‑33 (MQ=255) ataGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatag > 1:1448395‑M2/1‑63 (MQ=255) ataGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatag > 1:2588‑M2/1‑63 (MQ=255) ataGTATAAAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatag < 1:271302‑M2/100‑38 (MQ=255) tatataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcggg > 1:30590‑M2/1‑59 (MQ=255) tatataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcggg > 1:1597915‑M2/1‑59 (MQ=255) tataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcg > 2:358139‑M2/1‑57 (MQ=255) ataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcgg > 1:760343‑M2/1‑56 (MQ=255) ataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcgg < 1:449972‑M2/100‑45 (MQ=255) ataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcgg > 2:141732‑M2/1‑56 (MQ=255) taACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggc > 2:244455‑M2/1‑55 (MQ=255) taACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaaaccgccccggata < 2:248211‑M2/91‑37 (MQ=255) aaCACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggca > 1:897832‑M2/1‑54 (MQ=255) acTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcag > 1:1778060‑M2/1‑51 (MQ=255) tGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcaga > 2:433152‑M2/1‑49 (MQ=255) ngagaaTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcacggaaggccgccccggatagcgggcggcagaagga < 1:956559‑M2/99‑53 (MQ=255) aaTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggagggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatca < 1:223613‑M2/100‑57 (MQ=255) aTAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcag < 2:1098010‑M2/100‑58 (MQ=255) tAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcaga > 2:34742‑M2/1‑42 (MQ=255) aaaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaa > 2:198698‑M2/1‑41 (MQ=255) aaaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaa < 2:282747‑M2/100‑60 (MQ=255) aaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggactcagaat < 1:1704253‑M2/100‑61 (MQ=255) aaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccgaatagcgggcggcagaaggaatcagaat < 2:748992‑M2/100‑61 (MQ=255) ccGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggt < 1:492755‑M2/100‑69 (MQ=255) cGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtc > 2:1684715‑M2/1‑31 (MQ=255) cGGTGAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtc < 2:1484988‑M2/100‑70 (MQ=255) gAATGTGGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagac < 1:1364784‑M2/100‑74 (MQ=255) tgtgGTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacggg < 2:327432‑M2/100‑77 (MQ=255) ggTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctg < 2:1148906‑M2/100‑80 (MQ=255) gTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctgc > 2:1273728‑M2/1‑20 (MQ=255) gTCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctgc < 1:1296538‑M2/100‑81 (MQ=255) tCGGAAAACAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctgca < 2:1112491‑M2/100‑82 (MQ=255) tCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCt > 2:915829/1‑100 (MQ=255) gAAAACAAAGAGGAAAgggggggctaatcggcagggaaggcggccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctgcaagt < 1:994289‑M2/100‑85 (MQ=255) aCAAAGAGGAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctgcaagttgca > 1:19541‑M2/1‑12 (MQ=255) cAAAGAGGAAAgaggaaactaatcggcagggaaagccgccccggatagcgggcggcaaaaggaatcagaatttccaggtcagacgggctgcaagttgcag < 1:35736‑M2/100‑90 (MQ=255) agagaggaAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctgcaagttgta > 2:1234109‑M2/3‑10 (MQ=255) ggAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcaggcgggctgcaagttgcagaccgtt < 2:190781‑M2/100‑96 (MQ=255) ggAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctgcaagttgcagaccgtt < 2:711189‑M2/100‑96 (MQ=255) ggAAAgggggggctaatcggcagggaaggccgccccggatagcgggcggcagaaggaatcagaatttccaggtcagacgggctgcaagttgcagaccgtt < 2:1161078‑M2/100‑96 (MQ=255) | ATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGGGGCTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACC > NC_000913/379913‑380107 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |