New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2232736 =	NA (NA)	4 (0.050)	3/166	NT	NA	noncoding (1/34 nt)	REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	2232766 =	NA (NA)					noncoding (31/34 nt)	REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences

TTTACCCGCTGGTTTTGCGCAAGAAACGGCAAACTGTTTGCCGGGAATTTCGACACCAGGAGAGGGCTGGCAAGCCGGACAAGGCGTTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2232838‑2232736 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCTTAG  >  NC_000913/2232766‑2232863                                                                                                                                                                                                           TTTACCCGCTGGTTTTGCGCAAGAAACGGCAAACTGTTTGCCGGGCATTTGGACACCAGGAGAGGGCTTGCAAGCCGGACAAGGCGTTCACGCCGCATCC                                                                                                       >  1:1334304/1‑100  TTACCCGCTGGTTTTGCGCAAGAAACGGCAAACTGTTTGCCGGGAATTTCGACACCAGGAGAGGGCTGGCAAGCCGGACAAGGCGTTCACGCCGCATCCG                                                                                                      <  1:641138/100‑1  TTACCCGCTGGTTTTGCGCAAGAAACGGCAAACTGTTTGCCGGGAATTTCGACACCAGGAGAGGGCTGGCAAGCCGGACAAGGCGTTCACGCCGCATCCG                                                                                                      >  2:481646/1‑100    ACCCGCTGGTTTTGCGCAAGAAACGGCAAACTGTTTGCCGGGAATTTCGACACCAGGAGAGGGCTGGCAAGCCGGACAAGGCGTTCACGCCGCATCCGGC                                                                                                    <  1:1745896/100‑1    ACCCGCTGGTTTTGCGCAAGAAACGGCAAACTATTTGCCGGGAATTTCGACACCAGGAGAGGGCTGGCAAGCCGGACAAGGCGTTCACGCCGCATCCGGC                                                                                                    >  1:444815/1‑100                                                        CCAGGAGAGGGCTGGCAAGCCGGACAAGGCGTTCACGCCGCATCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCT                                                >  1:732262/1‑100                                                                   CTGGCAAGCCGGACAAGGCGTTCACGCCGCATCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACC                                     >  1:1676363/1‑100                                                                   CTGGCAAGCCGGACAAGGCGTTCACGCCGCATCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAAC                                      >  1:1117460/1‑99                                                                       CAAGCCGGACAAGGCGTTCACGCCGCATCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCG                                 >  1:1979993/1‑100                                                                                                  TCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCC      <  1:1403349/100‑1                                                                                                  TCCGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCC      <  2:1936017/100‑1                                                                                                   CCGGCTTGCCAGCCCTCTCCTGGTGTCGAACTTACCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGAAAATTTTCCT     >  2:1475511/1‑100                                                                                                    CGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCTT    >  1:973192/1‑100                                                                                                    CGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCTT    <  2:1116663/100‑1                                                                                                    CGGCTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCTT    >  2:832220/1‑100                                                                                                      GCTTGCCATCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCTTAG  <  1:1305597/100‑1                                                                                                                                                                                                           TTTACCCGCTGGTTTTGCGCAAGAAACGGCAAACTGTTTGCCGGGAATTTCGACACCAGGAGAGGGCTGGCAAGCCGGACAAGGCGTTCACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2232838‑2232736 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcTTGCCAGCCCTCTCCTGGTGTCGAAATTCCCGGCAAACAGTTTGCCGTTTCTTGCGCAAAACCAGCGGGTAAAGTAGCCTGATGGAAATTTTCCTTAG  >  NC_000913/2232766‑2232863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.