mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.30.0 revision f53f5bf51c1f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| JC JC | 2,418,669 | IS5 (–) +4 bp | coding (98‑101/363 nt) | folX → | D‑erythro‑7,8‑dihydroneopterin triphosphate 2'‑epimerase and dihydroneopterin aldolase |
| MC JC | 3,912,832 | 6827 bp→81 bp | [atpC]–[atpI] | [atpC], atpD, atpG, atpA, atpH, atpF, atpE, atpB, [atpI] | |
| RA | 4,145,990 | C→T | S508S (TCG→TCA) | eptC ← | LPS heptose I phosphoethanolamine transferase |
| RA | 4,184,462 | A→G | D622G (GAC→GGC) | rpoC → | RNA polymerase, beta prime subunit |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207014 = | 11 (0.140) | 38 (0.510) | 32/506 | 1.5 | 78.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1208843 = | 11 (0.150) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207029 | 11 (0.140) | 82 (1.090) | 57/506 | 0.3 | 88.5% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1208826 | 11 (0.150) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||