mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.30.0 revision f53f5bf51c1f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,293,438 | 0 | A | G | 37.5% | 23.8 / 29.9 | 42 | intergenic (+396/+248) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,293,439 | 0 | A | C | 35.7% | 25.6 / 30.5 | 42 | intergenic (+397/+247) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 13 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096185 = | 60 (0.750) | 12 (0.210) | 8/378 | 4.5 | 20.7% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1096727 | 50 (0.890) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 4293080 = | NA (NA) | 16 (0.230) | 8/460 | 5.4 | NA | intergenic (+38/+606) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4293644 | NA (NA) | noncoding (562/602 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | = 662940 | 92 (1.190) | 7 (0.090) +TAACG |
3/510 | 8.2 | 7.0% | coding (248/1212 nt) | dacA | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 5) |
| ? | NC_000913 | 662941 = | 93 (1.160) | coding (247/1212 nt) | dacA | D‑alanyl‑D‑alanine carboxypeptidase (penicillin‑binding protein 5) | |||||
| * | ? | NC_000913 | 3943227 = | 91 (1.140) | 3 (0.040) | 3/524 | 8.3 | 3.3% | noncoding (2276/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 4037032 = | NA (NA) | noncoding (2266/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913 | 1904245 = | 63 (0.790) | 3 (0.040) | 3/520 | 8.3 | 4.6% | coding (533/567 nt) | mntP | putative Mn(2+) efflux pump, mntR‑regulated |
| ? | NC_000913 | 1904266 = | 63 (0.820) | coding (554/567 nt) | mntP | putative Mn(2+) efflux pump, mntR‑regulated | |||||
| * | ? | NC_000913 | = 1193870 | 82 (1.030) | 3 (0.040) | 3/524 | 8.3 | 3.8% | coding (306/654 nt) | rluE | 23S rRNA pseudouridine(2457) synthase |
| ? | NC_000913 | = 1193881 | 74 (0.950) | coding (295/654 nt) | rluE | 23S rRNA pseudouridine(2457) synthase | |||||
| * | ? | NC_000913 | 757861 = | 93 (1.160) | 3 (0.040) | 3/522 | 8.3 | 3.2% | intergenic (+232/‑69) | sdhB/sucA | succinate dehydrogenase, FeS subunit/2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding |
| ? | NC_000913 | 757881 = | 91 (1.170) | intergenic (+252/‑49) | sdhB/sucA | succinate dehydrogenase, FeS subunit/2‑oxoglutarate decarboxylase, thiamine triphosphate‑binding | |||||
| * | ? | NC_000913 | 228016 = | NA (NA) | 3 (0.040) | 3/524 | 8.3 | NA | noncoding (2258/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228041 = | NA (NA) | noncoding (2283/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | 2734172 = | 96 (1.200) | 3 (0.040) | 3/534 | 8.4 | 3.7% | intergenic (+42/‑229) | bamD/raiA | BamABCDE complex OM biogenesis lipoprotein/cold shock protein associated with 30S ribosomal subunit |
| ? | NC_000913 | 2734647 = | 60 (0.760) | coding (247/342 nt) | raiA | cold shock protein associated with 30S ribosomal subunit | |||||
| * | ? | NC_000913 | = 3924475 | 94 (1.180) | 3 (0.040) | 3/538 | 8.5 | 3.1% | coding (73/993 nt) | asnA | asparagine synthetase A |
| ? | NC_000913 | 3924479 = | 95 (1.190) | coding (77/993 nt) | asnA | asparagine synthetase A | |||||