mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.26.1
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 4,532,534 | 0 | G→C | 11.9% | 10.1 ‑0.4 ‑0.7 | 42 | A217G (GCC→GGC) | yjhP | putative methyltransferase |
| * | NC_000913 | 4,532,537 | 0 | G→C | 12.2% | 10.1 ‑0.5 ‑0.6 | 42 | A216G (GCC→GGC) | yjhP | putative methyltransferase |
| * | NC_000913 | 1,396,230 | 0 | T→G | 100.0% | 0.7 | 1 | V52G (GTC→GGC) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 575,588 | 0 | A→C | 100.0% | 0.5 | 1 | F56V (TTT→GTT) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 2,170,374 | 0 | T→C | 100.0% | 0.4 | 1 | Y47H (TAC→CAC) | insE1 | IS3 transposase A |
| Marginal mixed read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 380,012 | 1 | .→G | 12.2% | 18.8 ‑0.4 ‑0.4 | 41 | intergenic (‑131/+57) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| * | NC_000913 | 3,946,620 | 0 | A→C | 10.3% | 12.5 0.0 ‑0.2 | 58 | intergenic (+13/‑80) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| * | NC_000913 | 4,296,060 | 0 | C→T | 24.5% | 26.0 0.0 ‑0.1 | 49 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 56 (1.160) | 7 (0.150) | 7/400 | 5.9 | 12.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 41 (0.890) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4459372 | 42 (0.870) | 4 (0.090) | 4/406 | 7.6 | 9.2% | intergenic (+61/‑118) | pmbA/cybC | putative antibiotic peptide MccB17 maturation peptidase/pseudogene, truncated cytochrome b562; cytochrome b(562) |
| ? | NC_000913 | = 4459452 | 38 (0.810) | intergenic (+141/‑38) | pmbA/cybC | putative antibiotic peptide MccB17 maturation peptidase/pseudogene, truncated cytochrome b562; cytochrome b(562) | |||||
| * | ? | NC_000913 | = 1966892 | 41 (0.850) | 3 (0.070) | 3/396 | 8.1 | 6.5% | coding (146/645 nt) | cheZ | chemotaxis regulator, protein phosphatase for CheY |
| ? | NC_000913 | = 1966972 | 47 (1.030) | coding (66/645 nt) | cheZ | chemotaxis regulator, protein phosphatase for CheY | |||||
| * | ? | NC_000913 | 2371501 = | 64 (1.320) | 3 (0.060) | 3/412 | 8.3 | 4.8% | coding (594/1653 nt) | arnT | 4‑amino‑4‑deoxy‑L‑arabinose transferase |
| ? | NC_000913 | 2371646 = | 57 (1.200) | coding (739/1653 nt) | arnT | 4‑amino‑4‑deoxy‑L‑arabinose transferase | |||||
| * | ? | NC_000913 | 2768602 = | 57 (1.180) | 3 (0.060) | 3/404 | 8.2 | 5.1% | intergenic (+29/‑63) | yfjP/yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | 2768628 = | 57 (1.220) | intergenic (+55/‑37) | yfjP/yfjQ | CP4‑57 prophage; 50S ribosome‑binding GTPase family protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | 3258494 = | 56 (1.160) | 3 (0.060) | 3/408 | 8.3 | 5.5% | coding (1156/1365 nt) | tdcG | L‑serine dehydratase 3, anaerobic |
| ? | NC_000913 | 3258574 = | 49 (1.040) | coding (1076/1365 nt) | tdcG | L‑serine dehydratase 3, anaerobic | |||||
| * | ? | NC_000913 | = 3810582 | 56 (1.160) | 3 (0.060) | 3/400 | 8.2 | 5.2% | coding (571/810 nt) | mutM | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase |
| ? | NC_000913 | = 3810631 | 55 (1.190) | coding (522/810 nt) | mutM | formamidopyrimidine/5‑formyluracil/ 5‑hydroxymethyluracil DNA glycosylase | |||||
| * | ? | NC_000913 | 4334626 = | 48 (0.990) | 3 (0.060) | 3/402 | 8.2 | 6.2% | coding (965/1644 nt) | eptA | lipid A phosphoethanolamine transferase |
| ? | NC_000913 | 4334684 = | 44 (0.950) | coding (907/1644 nt) | eptA | lipid A phosphoethanolamine transferase | |||||
| * | ? | NC_000913 | 4513065 = | 68 (1.410) | 3 (0.060) | 3/408 | 8.3 | 4.4% | coding (345/999 nt) | fecC | ferric citrate ABC transporter permease |
| ? | NC_000913 | 4513114 = | 65 (1.380) | coding (296/999 nt) | fecC | ferric citrate ABC transporter permease | |||||
| * | ? | NC_000913 | 4513628 = | 51 (1.050) | 3 (0.060) | 3/408 | 8.3 | 5.2% | coding (681/903 nt) | fecB | ferric citrate ABC transporter periplasmic binding protein |
| ? | NC_000913 | 4513725 = | 59 (1.250) | coding (584/903 nt) | fecB | ferric citrate ABC transporter periplasmic binding protein | |||||