mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 205,979 | T→C | D189D (GAT→GAC) | yhjG → | hypothetical protein |
| JC JC | 225,117 | Δ4 bp :: repeat_region (+) +9 bp :: Δ1 bp | coding (273‑281/528 nt) | gadE ← | transcriptional regulator GadE |
| JC JC | 1,501,141 | Δ1 bp :: repeat_region (+) +4 bp | coding (132‑135/963 nt) | menC → | o‑succinylbenzoate synthase |
| RA | 2,140,096 | T→C | E180G (GAA→GGA) | purR ← | PurR family transcriptional regulator |
| JC JC | 2,238,049 | Δ3 bp :: repeat_region (+) +5 bp :: Δ1 bp | coding (157‑161/216 nt) | essQ → | Lysis protein S homolog from lambdoid prophage Qin |
| RA | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| JC | 3,702,452 | (GTCATAACGACCGCCTAGGG)1→2 | coding (1442/2244 nt) | fhuA ← | ferrichrome‑iron receptor |
| RA | 4,547,816 | A→G | Y80H (TAC→CAC) | rho ← | transcription termination factor Rho |
| JC JC | 4,548,240 | repeat_region (+) +4 bp :: Δ7 bp | intergenic (‑1/+137) | ECDH1_RS22450 ← / ← trxA | rho operon leader peptide/thiol reductase thioredoxin |
| RA | 4,625,708 | A→C | F11C (TTC→TGC) | tnaA ← | tryptophanase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | 245493 = | 58 (0.100) | 577 (0.980) | 236/300 | 0.1 | 61.8% | coding (629/1500 nt) | pitA | Low‑affinity inorganic phosphate transporter 1 |
| ? | DH1 | = 4011715 | 654 (1.110) | intergenic (+13/+15) | insG/ECDH1_RS19860 | transposase/hypothetical protein | |||||
| * | ? | DH1 | = 245504 | 67 (0.110) | 650 (1.110) | 255/300 | 0.0 | 60.0% | coding (618/1500 nt) | pitA | Low‑affinity inorganic phosphate transporter 1 |
| ? | DH1 | 4010290 = | 801 (1.360) | intergenic (‑543/‑84) | yjhB/insG | MFS transporter membrane protein/transposase | |||||