mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 34 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 936,169 | 0 | T | . | 33.3% | 337.9 / 172.8 | 138 | intergenic (‑13/+21) | ECDH1_RS04615/ECDH1_RS04620 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 936,293 | 0 | T | . | 33.3% | 336.4 / 188.4 | 155 | intergenic (‑27/+7) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 936,297 | 0 | A | G | 32.1% | 324.4 / 184.3 | 204 | intergenic (‑31/+3) | ECDH1_RS04620/ECDH1_RS04625 | tRNA‑Met/tRNA‑Met |
| * | DH1 | 1,065,618 | 0 | A | G | 31.9% | 414.3 / 239.4 | 314 | intergenic (+53/‑10) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 2,169,548 | 0 | G | T | 30.6% | 572.4 / 109.0 | 350 | P671Q (CCG→CAG) | rsxC | electron transporter RsxC |
| * | DH1 | 613,770 | 0 | C | A | 30.4% | 346.3 / 33.5 | 239 | intergenic (+631/+392) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 3,448,526 | 0 | A | C | 29.8% | 907.2 / 150.0 | 524 | intergenic (‑86/+70) | malZ/proY | alpha‑glycosidase/proline‑specific permease ProY |
| * | DH1 | 3,906,832 | 0 | C | A | 29.1% | 190.3 / 14.1 | 112 | intergenic (+3/‑32) | ECDH1_RS19315/ECDH1_RS19320 | tRNA‑Leu/tRNA‑Leu |
| * | DH1 | 2,169,577 | 0 | T | G | 28.6% | 361.9 / 83.5 | 344 | R661R (CGA→CGC) | rsxC | electron transporter RsxC |
| * | DH1 | 1,065,605 | 0 | A | T | 28.6% | 451.4 / 174.9 | 276 | intergenic (+40/‑23) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 1,065,614 | 0 | A | G | 28.5% | 450.6 / 212.1 | 303 | intergenic (+49/‑14) | ECDH1_RS05245/ECDH1_RS05250 | tRNA‑Arg/tRNA‑Arg |
| * | DH1 | 4,122,124 | 0 | C | A | 27.4% | 414.7 / 35.0 | 338 | intergenic (‑15/+22) | ECDH1_RS20430/ECDH1_RS20435 | tRNA‑Gly/tRNA‑Gly |
| * | DH1 | 3,906,837 | 0 | C | G | 26.7% | 190.5 / 23.7 | 114 | intergenic (+8/‑27) | ECDH1_RS19315/ECDH1_RS19320 | tRNA‑Leu/tRNA‑Leu |
| * | DH1 | 2,591,513 | 0 | T | G | 26.1% | 303.5 / 57.2 | 309 | D86A (GAC→GCC) | ECDH1_RS12815 | hypothetical protein |
| * | DH1 | 2,326,287 | 0 | G | T | 24.7% | 1286.2 / 133.0 | 596 | intergenic (+207/+200) | yddM/fdnI | transcriptional regulator/formate dehydrogenase nitrate‑inducible cytochrome b556(Fdn) subunit |
| * | DH1 | 2,169,673 | 0 | A | T | 24.1% | 148.3 / 32.9 | 168 | R629R (CGT→CGA) | rsxC | electron transporter RsxC |
| * | DH1 | 2,591,261 | 0 | C | A | 23.8% | 971.8 / 163.7 | 483 | intergenic (+27/+233) | ECDH1_RS12810/ECDH1_RS12815 | tRNA‑Tyr/hypothetical protein |
| * | DH1 | 2,169,568 | 0 | C | G | 23.7% | 616.8 / 38.2 | 340 | A664A (GCG→GCC) | rsxC | electron transporter RsxC |
| * | DH1 | 3,447,403 | 0 | A | C | 23.4% | 808.1 / 77.4 | 403 | G346G (GGT→GGG) | malZ | alpha‑glycosidase |
| * | DH1 | 1,165,444 | 0 | A | C | 23.2% | 1046.1 / 77.5 | 444 | T71P (ACG→CCG) | yfiF | methyltransferase |
| Marginal new junction evidence (lowest skew 10 of 53 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | = 2668875 | 500 (0.850) | 127 (0.240) | 93/268 | 15.8 | 21.8% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | = 2670672 | 463 (0.880) | coding (306/789 nt) | stfP | integrase | |||||
| * | ? | DH1 | 2668875 = | 461 (0.870) | 81 (0.150) | 69/268 | 23.0 | 15.0% | pseudogene (20/345 nt) | pinE | hypothetical protein |
| ? | DH1 | 2670674 = | NA (NA) | noncoding (1/242 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 1519086 | 408 (0.690) | 59 (0.140) | 45/220 | 26.3 | 17.9% | coding (71/186 nt) | ECDH1_RS07485 | hypothetical protein |
| ? | DH1 | 1519282 = | 244 (0.570) | coding (787/900 nt) | yfaD | transposase | |||||
| * | ? | DH1 | = 2590941 | 517 (0.880) | 77 (0.150) | 49/260 | 29.7 | 19.5% | intergenic (+1/‑209) | ECDH1_RS12805/ECDH1_RS12810 | tRNA‑Tyr/tRNA‑Tyr |
| ? | DH1 | 2591414 = | 187 (0.370) | noncoding (199/555 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | 3183985 = | 612 (1.040) | 117 (0.220) +GATTGTTTCTTC |
45/276 | 33.4 | 23.8% | intergenic (+379/‑1) | asnB/ECDH1_RS15770 | asparagine synthetase B/tRNA‑Met |
| ? | DH1 | = 3184256 | 202 (0.340) | intergenic (+2/‑33) | ECDH1_RS15780/ECDH1_RS15785 | tRNA‑Gln/tRNA‑Gln | |||||
| * | ? | DH1 | = 1355505 | 546 (0.930) | 65 (0.130) | 40/260 | 33.9 | 14.7% | noncoding (54/348 nt) | repeat_region | repeat region |
| ? | DH1 | 3099693 = | 283 (0.560) | noncoding (58/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | = 1519281 | 409 (0.700) | 68 (0.130) +AACCTTCTAATT |
42/276 | 34.8 | 15.3% | coding (788/900 nt) | yfaD | transposase |
| ? | DH1 | 1519282 = | 409 (0.700) | coding (787/900 nt) | yfaD | transposase | |||||
| * | ? | DH1 | 1355966 = | 217 (0.370) | 107 (0.190) +CTTC |
41/292 | 37.1 | 27.1% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3099750 | 375 (0.640) | noncoding (1/76 nt) | ECDH1_RS15360 | tRNA‑Lys | |||||
| * | ? | DH1 | 1355966 = | 217 (0.370) | 76 (0.130) +CTTC |
40/292 | 37.6 | 15.4% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3100565 | 639 (1.090) | noncoding (1/76 nt) | ECDH1_RS15385 | tRNA‑Lys | |||||
| * | ? | DH1 | 1355966 = | 217 (0.370) | 213 (0.370) +CTTC |
40/292 | 37.6 | 50.2% | noncoding (76/76 nt) | ECDH1_RS06685 | tRNA‑Val |
| ? | DH1 | = 3099542 | NA (NA) | noncoding (268/268 nt) | repeat_region | repeat region | |||||