Predicted mutation
evidence seq id position mutation annotation gene description
MC JC DH1 225,412 Δ5,109 bp repeat_region‑mediated hdeD[slp] hdeD, hdeA, hdeB, yhiD, dctR, slp, [slp]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ DH1 225412 231677–230527 5116–6266 580 [3] [324] 329 hdeD–insH1 hdeD, hdeA, hdeB, yhiD, dctR, slp, slp, insH1

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? DH1 = 2254113 (0.010)572 (1.190) 239/300 0.0 99.5% intergenic (‑14/+785) gadE/hdeD transcriptional regulator GadE/protein HdeD
?DH1 230533 = NA (NA)noncoding (7/1207 nt) repeat_region repeat region

Only 100 of 580 total aligned reads displayed.

CAATGATAACCTTGAAGGGTTTATTGCCTACTTTTTTGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGCCGTTATCGTTTCGAATATGTCATCCTTTTCATTATTTACATCCTTGTCCGAATCGTTGTTCAATATAGTAAACGCCTATAAGAACTTTACCCTTCGTGAACTAATACGTCTATTAACACTAATCAATACTTCAGATTTATCCATCACGC  >  DH1/225262‑225561
                                                                                                                                                     |                                                                                                                                                      
cAATGATAACCTTGAAGGGTTTATTGCCTACTTTTTTGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTAACTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGATCCTTAGg                                                                                                                                                       >  6:201520‑M1/1‑150 (MQ=255)
 aaTGATAACCTTGAAGGGTTTATTGCCTACTTTTTTGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGgg                                                                                                                                                      >  7:1082917‑M1/1‑149 (MQ=255)
  aTGATAACCTTGAAGGGTTTATTGCCTACTTTTTTGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGgga                                                                                                                                                     <  1:1881607‑M1/151‑4 (MQ=255)
    gATAACCTTGAAGGTTTTATTGCCTACTTTTTTGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaa                                                                                                                                                    <  7:1241507‑M1/150‑5 (MQ=255)
    gATAACCTTGAAGGGTTTATTGCCTACTTTTTTGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaag                                                                                                                                                   <  3:847376‑M1/151‑6 (MQ=255)
    gATAACCTTGAAGGGTTTATTGCCTACTTTTTTGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaa                                                                                                                                                    <  5:447225‑M1/150‑5 (MQ=255)
      tAACCTTGAAGGGTTTATTGCCTACTTTTTTGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggt                                                                                                                                                 >  5:1631113‑M1/1‑144 (MQ=255)
             gAAGGGTTTATTGCCTACTTTTTTGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaaca                                                                                                                                          <  7:1419930‑M1/151‑15 (MQ=255)
               aGGGTTTATTGCCTACTTTTTTGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaaca                                                                                                                                          >  1:1121855‑M1/1‑135 (MQ=255)
                  gTTTATTGCCTACTTTTTAGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATAATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaagctgcgaacaagtcc                                                                                                                                     >  8:1227754‑M1/1‑132 (MQ=255)
                    ttATTGCCTACTTTTTTGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccc                                                                                                                                    <  4:1540819‑M1/150‑21 (MQ=255)
                       ttGCCTACTTTTTTGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgat                                                                                                                                >  7:336365‑M1/1‑127 (MQ=255)
                              cTTTTTTGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatg                                                                                                                             >  7:732899‑M1/1‑120 (MQ=255)
                                tttttGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatc                                                                                                                        <  7:1693063‑M1/150‑33 (MQ=255)
                                tttttGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatc                                                                                                                        >  8:1511538‑M1/1‑118 (MQ=255)
                                  tttGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcat                                                                                                                      <  5:1466983‑M1/150‑35 (MQ=255)
                                  tttGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGCCGTTATCGTTTCGAATATGTCATCCTTTTCatt                                                                                                                      <  3:1771556/150‑1 (MQ=255)
                                    tGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtt                                                                                                                   >  2:853569‑M1/1‑114 (MQ=255)
                                    tGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtt                                                                                                                   >  5:1590165‑M1/1‑114 (MQ=255)
                                         tctGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTATAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtc                                                                                                               >  1:1548362‑M1/1‑109 (MQ=255)
                                          ctGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat                                                                                                             >  2:185649‑M1/1‑108 (MQ=255)
                                           tGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacacgtccctgatatgagatcatgtttgtcat                                                                                                             >  6:876647‑M1/1‑107 (MQ=255)
                                           tGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc                                                                                                            >  4:1833677‑M1/1‑107 (MQ=255)
                                            gACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat                                                                                                             <  1:1260349‑M1/149‑44 (MQ=255)
                                             aCAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctg                                                                                                          <  1:3062‑M1/151‑47 (MQ=255)
                                             aCAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctg                                                                                                          <  1:1447758‑M1/151‑47 (MQ=255)
                                                gggAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag                                                                                                       <  5:894775‑M1/151‑50 (MQ=255)
                                                gggAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag                                                                                                       <  3:586840‑M1/151‑50 (MQ=255)
                                                 ggAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                                                                                      >  3:1264776‑M1/1‑101 (MQ=255)
                                                      tGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                                                                                  <  2:12095‑M1/150‑55 (MQ=255)
                                                        aTTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccataga                                                                                                >  7:1634334‑M1/1‑94 (MQ=255)
                                                          ttttATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaac                                                                                              >  8:725474‑M1/1‑92 (MQ=255)
                                                             tATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                          >  4:1699609‑M1/1‑89 (MQ=255)
                                                             tATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgcagccatagaacaggg                                                                                          >  6:1073631‑M1/1‑89 (MQ=255)
                                                                 aTTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttc                                                                                       >  5:239880‑M1/1‑85 (MQ=255)
                                                                   ttCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcat                                                                                     <  4:388035‑M1/150‑68 (MQ=255)
                                                                     cGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGTATCTTTCGTGATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtgcctgatatgagatcatgtttgtcatctggagccatagaacagggttcatca                                                                                   <  6:1524967‑M1/150‑70 (MQ=255)
                                                                     cGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat                                                                                  >  3:682563‑M1/1‑81 (MQ=255)
                                                                      gTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatg                                                                                 <  8:1625272‑M1/151‑72 (MQ=255)
                                                                      gTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatg                                                                                 >  3:394694‑M1/1‑80 (MQ=255)
                                                                      gTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaagtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatg                                                                                 <  2:1245462‑M1/151‑72 (MQ=255)
                                                                           tATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtc                                                                             >  2:744336‑M1/1‑75 (MQ=255)
                                                                           tATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtc                                                                             >  5:841548‑M1/1‑75 (MQ=255)
                                                                            aTCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat                                                                           >  3:1427983‑M1/1‑74 (MQ=255)
                                                                               tttCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatca                                                                         >  7:459332‑M1/1‑71 (MQ=255)
                                                                                ttCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat                                                                           <  6:1152098‑M1/147‑78 (MQ=255)
                                                                                  cAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaactt                                                                     <  5:1324401‑M1/151‑84 (MQ=255)
                                                                                       gCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct                                                                 <  7:573078‑M1/150‑88 (MQ=255)
                                                                                       gCCAAAAGACCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctt                                                                <  3:156376‑M1/151‑89 (MQ=255)
                                                                                        ccAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc                                                               >  6:972505‑M1/1‑62 (MQ=255)
                                                                                        ccAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc                                                               <  2:416397‑M1/151‑90 (MQ=255)
                                                                                        ccAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc                                                               <  7:237941‑M1/151‑90 (MQ=255)
                                                                                          aaaaGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc                                                             >  6:326157‑M1/1‑60 (MQ=255)
                                                                                          aaaaGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc                                                             >  3:290916‑M1/1‑60 (MQ=255)
                                                                                           aaaGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgcc                                                            <  7:941213‑M1/151‑93 (MQ=255)
                                                                                            aaGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccg                                                           >  6:1720380‑M1/1‑58 (MQ=255)
                                                                                             aGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccg                                                           >  2:1086648‑M1/1‑57 (MQ=255)
                                                                                              gCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgac                                                         >  6:1428605‑M1/1‑56 (MQ=255)
                                                                                                 cTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt                                                      >  4:1431149‑M1/1‑53 (MQ=255)
                                                                                                   gTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt                                                      <  2:1772046‑M1/149‑99 (MQ=255)
                                                                                                     aaaagaaaagAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa                                                   <  3:1115845‑M1/150‑102 (MQ=255)
                                                                                                      aaagaaaagaATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt                                                 >  1:918578‑M1/1‑48 (MQ=255)
                                                                                                      aaagaaaagaATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt                                                 >  6:1249388‑M1/1‑48 (MQ=255)
                                                                                                       aagaaaagaaTCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattc                                                <  8:88978‑M1/151‑105 (MQ=255)
                                                                                                         gaaaagaaTCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattc                                                >  3:495456‑M1/1‑45 (MQ=255)
                                                                                                           aaagaaTCTTTCGTCATGAGAAATATCTTAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagca                                            <  4:1033597‑M1/151‑109 (MQ=255)
                                                                                                            aagaaTCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcag                                           <  8:343287‑M1/151‑110 (MQ=255)
                                                                                                                    ttCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc                                      <  5:1857942‑M1/148‑115 (MQ=255)
                                                                                                                     tCGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgcc                                   <  3:1693130‑M1/150‑118 (MQ=255)
                                                                                                                      cGTCATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcaggagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt                                 >  4:728172‑M1/1‑32 (MQ=255)
                                                                                                                         cATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcag                              <  5:586157‑M1/151‑123 (MQ=255)
                                                                                                                         cATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcag                              <  4:312940‑M1/151‑123 (MQ=255)
                                                                                                                         cATGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtc                                >  2:1556586‑M1/1‑29 (MQ=255)
                                                                                                                          aTGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaga                             <  2:349514‑M1/151‑124 (MQ=255)
                                                                                                                          aTGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtc                                >  1:1635561‑M1/1‑28 (MQ=255)
                                                                                                                          aTGAGAAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtc                                >  4:217416‑M1/1‑28 (MQ=255)
                                                                                                                            gagaAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacgttcgccgacagtgaattcagcagtaagcgccctcagacc                           >  1:486619‑M1/1‑26 (MQ=255)
                                                                                                                             agaAAAATCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagacca                          <  4:898850‑M1/151‑127 (MQ=255)
                                                                                                                               aaaaaTCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccaga                        <  1:1024398‑M1/151‑129 (MQ=255)
                                                                                                                                aaaaTCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaa                       <  8:503180‑M1/151‑130 (MQ=255)
                                                                                                                                aaaaTCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaa                       <  7:1472707‑M1/151‑130 (MQ=255)
                                                                                                                                  aaTCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaa                     <  6:540533‑M1/151‑132 (MQ=255)
                                                                                                                                  aaTCATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaa                     <  4:588044‑M1/151‑132 (MQ=255)
                                                                                                                                     cATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattccgcagtaagcgccgtcagaccagaaaag                    >  8:1387241‑M1/1‑17 (MQ=255)
                                                                                                                                     cATAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagag                  <  1:790815‑M1/151‑135 (MQ=255)
                                                                                                                                      aTAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaag                    >  5:1244052‑M1/1‑16 (MQ=255)
                                                                                                                                       tAACTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaag                    >  4:1307381‑M1/1‑15 (MQ=255)
                                                                                                                                        aaCTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccttcagaccagaaaagagatt               <  2:621434‑M1/151‑138 (MQ=255)
                                                                                                                                        aaCTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatt               >  4:1132011‑M1/1‑14 (MQ=255)
                                                                                                                                        aaCTTGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatt               <  8:1902909‑M1/151‑138 (MQ=255)
                                                                                                                                           ttGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc            >  7:183447‑M1/1‑11 (MQ=255)
                                                                                                                                           ttGCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgattgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttc            >  1:638633‑M1/1‑11 (MQ=255)
                                                                                                                                             gCTCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt          <  5:1077033‑M1/151‑143 (MQ=255)
                                                                                                                                               tCCTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgt        >  8:1022997‑M1/1‑7 (MQ=255)
                                                                                                                                                ccTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc       <  1:582657‑M1/151‑146 (MQ=255)
                                                                                                                                                ccTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtc       >  7:840691‑M1/1‑6 (MQ=255)
                                                                                                                                                   tAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccg    >  1:1690244‑M1/1‑3 (MQ=255)
                                                                                                                                                   tAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccg    >  3:1017327‑M1/1‑3 (MQ=255)
                                                                                                                                                     gggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtcccgca  <  5:710585‑M1/151‑151 (MQ=255)
                                                                                                                                                     gggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaacagattttcttgtcccgca  <  6:61104‑M1/151‑151 (MQ=255)
                                                                                                                                                     |                                                                                                                                                      
CAATGATAACCTTGAAGGGTTTATTGCCTACTTTTTTGATCTCTGACAGGGAATTGATTTTTATCATTTCGTGATTATCTTTCAACTGCCAAAAGCCCTGTAAAAGAAAAGAATCTTTCGTCATGAGAAAAATCATAACTTGCTCCTTAGCCGTTATCGTTTCGAATATGTCATCCTTTTCATTATTTACATCCTTGTCCGAATCGTTGTTCAATATAGTAAACGCCTATAAGAACTTTACCCTTCGTGAACTAATACGTCTATTAACACTAATCAATACTTCAGATTTATCCATCACGC  >  DH1/225262‑225561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.