| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1366184 = | 126 (0.790) | 4 (0.030) | 4/142 | 14.7 | 3.3% | coding (82/669 nt) | pspA | phage shock protein |
| ? | NC_000913 | 1366205 = | 116 (0.770) | coding (103/669 nt) | pspA | phage shock protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTTCTGCCAACGCGCGCGCCGAAGTAGAACGTACTTCAACCAGTGTATCTTCCATCTCCTGGATCATCAGACGAACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1366262‑1366184‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCGC > NC_000913/1366205‑1366279 TTTCTGCCAACGCGCGCGCCGAAGTAGAACGTACTTCAACCAGTGTATCTTCCATCTCCTGGATCATCAGACGAAC > 2:5139252/1‑76TTTCTGCCAACGCGCGCGCCGAAGTAGAACGTACTTCAACCAGTGTATCTTCCATCTCCTGGATCATCAGACGAAC > 1:2881847/1‑76 TTCTGCCAACGCGCGCGCCGAAGTAGAACGTACTTCAACCAGTGTATCTTCCATCTCCTGGATCATCAGACGAACC > 2:3989661/1‑76 TTCTGCCAACGCGCGCGCCGAAGTAGAACGTACTTCAACCAGTGTATCTTCCATCTCCTGGATCATCAGACGAACC > 1:5713821/1‑76 TTCTGCCAACGCGCGCGCCGAAGTAGAACGTACTTCAACCAGTGTATCTTCCATCTCCTGGATCATCAGACGAACC > 2:4356644/1‑76 TCTGCCAACGCGCGCGCCGAAGTAGAACGTACTTCAAGCAGTGTATCTTCCATCTCCTGGATCATCAGACGAACCA < 2:2381300/76‑1 TCTGCCAACGCGCGCGCCGAAGTAGAACGTACTTCAACCAGTGTATCTTCCATCTCCTGGATCATCAGACGAACCA < 1:4161223/76‑1 TGCCAACGCGCGCGCCGAAGTAGAACGTACTTCAACCAGTGTATCTTCCATCTCCTGTATCATCAGACGAACC < 1:4711226/73‑1 TGCCAACGCGCGCGCCGAAGTAGAACGTACTTCAACCAGTGTATCTTCCATCTCCTGGATCATCAGACGAACC > 2:4711225/1‑73 GCGCGCGCCGAAGTAGAACGTACTTCAACCAGTGTATCTTCCATCTCCTGGATCATCAGACGAACCAGGAGATGGA > 1:1007572/1‑76 GCGCCGAAGTAGAACGTACTTCAACCAGTGTATCTTCCATCTCCTGGATCATCAGACGAACCAG < 1:2063242/64‑1 GCGCCGAAGTAGAACGTACTTCAACCAGTGTATCTTCCATCTCCTGGATCATCAGACGAACCAG > 2:2063242/1‑64 AAGTAGAACGTACTTCAACCAGTGTATCTTCCATCTCCTGGATCATCAGACGAACCAGGAGATGGAAGATACACTG < 2:1803657/76‑1 GTAGAACGTACTTCAACCAGTGTATCTTCCATCTCCTGGATCATCAGACGAACCAGGAGATGGAAGATACACTGGT < 2:1007572/76‑1 ACCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGAC < 2:3341617/76‑1 CCAGGCGATGGCAGATACACTGGTTGACGTACGTTCTACTTCGGCGCGCGCGTTGGCAGCAAAGCAACCGCTGACT > 2:2551277/1‑76 CCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACT > 2:2516543/1‑76 CCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACT > 2:611446/1‑76 CCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACT < 1:5248392/76‑1 AGGAGATGGAAGATACACTGGTTGAAGTACGTTCTCCTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCG < 2:3486112/76‑1 AGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCG < 2:4189094/76‑1 AGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCG < 2:4191283/76‑1 AGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCG > 2:4444540/1‑76 GGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCGC > 2:3082945/1‑76 GGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCGC > 2:4629028/1‑76 GGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCGC < 1:2801926/76‑1 GGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCGC < 1:1312954/76‑1 TTTCTGCCAACGCGCGCGCCGAAGTAGAACGTACTTCAACCAGTGTATCTTCCATCTCCTGGATCATCAGACGAACCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1366262‑1366184‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCGC > NC_000913/1366205‑1366279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |