| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1366184 = | 126 (0.790) | 4 (0.030) | 4/142 | 14.7 | 3.3% | coding (82/669 nt) | pspA | phage shock protein |
| ? | NC_000913 | 1366205 = | 116 (0.770) | coding (103/669 nt) | pspA | phage shock protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 132 total aligned reads displayed.
ATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCGCC > NC_000913/1366130‑1366280 | aTCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAgg < 1:1050723/76‑1 (MQ=255)aTCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAgg < 2:2898710/76‑1 (MQ=255) tCGTGAATGCCAACATCACCGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGga < 1:3118990/76‑1 (MQ=255) tCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGga < 1:98741/76‑1 (MQ=255) cGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGgag < 1:2656926/76‑1 (MQ=255) gTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGgaga > 1:4128325/1‑76 (MQ=255) ggAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGAt < 2:25663/75‑1 (MQ=255) gAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGgaga > 1:122635/1‑74 (MQ=255) aaTGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATgg < 1:699691/76‑1 (MQ=255) tGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGaa < 1:1395408/76‑1 (MQ=255) tGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGaa < 1:800343/76‑1 (MQ=255) tGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGaa < 2:4435004/76‑1 (MQ=255) tGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGaa > 1:4389720/1‑76 (MQ=255) gCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAg < 1:4109437/76‑1 (MQ=255) gCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGACTGAAg > 2:1183112/1‑76 (MQ=255) gCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGCTTCGTCGCATGATCCAGGAGAGGGCAg > 2:1164770/1‑76 (MQ=255) cAACATCAACGCTCTGTTAGAGAAAGCGGAAGCTCCACAGAAACTGGTTCGTCTGATGATCCAGGAGAAGGaaagt > 2:140131/1‑73 (MQ=255) cAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGaa > 2:2741110/1‑75 (MQ=255) aaCATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGaga > 1:4266821/1‑74 (MQ=255) aaCATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATa > 2:4075421/1‑76 (MQ=255) aaCATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATa < 2:4047675/76‑1 (MQ=255) aCATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATac > 2:1040127/1‑76 (MQ=255) cATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATaca > 1:2482815/1‑76 (MQ=255) aTCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATacac > 1:3449191/1‑76 (MQ=255) tCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACt < 2:5007866/76‑1 (MQ=255) tCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACt > 1:2409332/1‑76 (MQ=255) aaCGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTgg > 1:1866287/1‑76 (MQ=255) aCGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGt > 1:2400225/1‑76 (MQ=255) cGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGtt < 2:1972809/76‑1 (MQ=255) cGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGtt < 1:1964081/76‑1 (MQ=255) cGCTCGGTGAGAGAAAGCGGAAGCTCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGtt < 2:21667/76‑1 (MQ=255) gCTCTGTTAGAGAAAGCGGCAGATCCCCCGAAACTGGTTCGTCTGATGATCCAGGAGCTGGAAGATCCACTGGTTg > 1:745206/1‑76 (MQ=255) gCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTg > 1:4356645/1‑76 (MQ=255) gCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTg > 1:1242893/1‑76 (MQ=255) tctGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGAt < 2:1817949/64‑1 (MQ=255) tctGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGAt > 1:1817949/1‑64 (MQ=255) tctGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGaa > 2:4327004/1‑76 (MQ=255) ttAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTAc > 1:3002845/1‑76 (MQ=255) tAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGGAGTACg < 2:4108596/76‑1 (MQ=255) tAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACg < 2:142680/76‑1 (MQ=255) tAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACg > 1:555862/1‑76 (MQ=255) agatAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGt < 1:4894208/76‑1 (MQ=255) agagAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGt < 2:3450735/76‑1 (MQ=255) gaAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACATTGGTTGAAGTACGTTCt > 1:662280/1‑76 (MQ=255) gaAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCt > 2:2353980/1‑76 (MQ=255) aaaGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTa < 2:414366/76‑1 (MQ=255) aaaGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTa < 2:371141/76‑1 (MQ=255) aGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACt < 2:2489678/76‑1 (MQ=255) gCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACtt < 2:2758284/76‑1 (MQ=255) cGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTc < 1:2794460/76‑1 (MQ=255) ggAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCg < 2:5143221/76‑1 (MQ=255) aaGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgc < 2:1866287/76‑1 (MQ=255) aGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgcg > 1:1623244/1‑76 (MQ=255) gATCCACAGAAACTGGTTCGTCTGATGATCCAGGTGATGGAAGATACACTGGCTGAAGGACGTTCTACTTCGgcgc > 1:4479872/1‑76 (MQ=255) gATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgcgc < 2:4651406/76‑1 (MQ=255) aTCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgcgcg > 2:2135258/1‑76 (MQ=255) tCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgcgcgc > 2:3360235/1‑76 (MQ=255) ccACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgcgcgcg < 2:4782355/76‑1 (MQ=255) cacaGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgcgcgcgc > 2:2881847/1‑76 (MQ=255) acaGAAACTGGTTCGTCTGATGATACAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgagcgcgag > 1:3396926/1‑74 (MQ=255) caGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGt < 2:4389719/76‑1 (MQ=255) aGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGtt > 1:4031913/1‑76 (MQ=255) gtgaCTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTg < 2:2533547/73‑1 (MQ=255) aaaCTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTgg < 1:46070/76‑1 (MQ=255) aCTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCa < 1:1040127/76‑1 (MQ=255) cTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgcgc < 2:2063242/64‑1 (MQ=255) tGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCaga > 1:4161223/1‑76 (MQ=255) ggTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCagaa < 2:3989661/76‑1 (MQ=255) ggTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCagaa < 1:5713821/76‑1 (MQ=255) ggTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCa < 2:4711225/73‑1 (MQ=255) ggTTCGTCTGATGATACAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCa > 1:4711226/1‑73 (MQ=255) gTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCagaaa < 1:2881847/76‑1 (MQ=255) gTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCagaaa < 2:5139252/76‑1 (MQ=255) tCGTCTGATGTTCGAGGAGATGGAAGATACGCTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCagaaaag < 2:1813695/76‑1 (MQ=255) tCGTCTGATGATCCCGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCagaaaag > 1:5201072/1‑76 (MQ=255) tCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCagaaaag > 1:5609622/1‑76 (MQ=255) cGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCagacaaga > 2:497005/1‑76 (MQ=255) cGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCagaaaaga > 1:758057/1‑76 (MQ=255) gTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCagaaaagaa < 2:4722241/76‑1 (MQ=255) gTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCagaaaagaa > 2:5305853/1‑76 (MQ=255) cTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTCCCTTCCACTTCGGCGCGCGCGTTCGCACACAAGAAAc > 2:2904307/1‑76 (MQ=255) gatgatCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAg > 1:4766032/1‑76 (MQ=255) atgatCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCTCGTTGGCAGAAAAGAAACAGc < 1:4428354/76‑1 (MQ=255) tgatCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCt < 1:5530695/76‑1 (MQ=255) gatCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTg > 1:1794136/1‑76 (MQ=255) gatCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTg < 1:1833676/76‑1 (MQ=255) atCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGa < 1:1341216/76‑1 (MQ=255) atCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGa > 2:4303423/1‑76 (MQ=255) tCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGAc > 2:3112885/1‑76 (MQ=255) tCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGAc < 2:191514/76‑1 (MQ=255) accAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGAc < 2:3341617/75‑1 (MQ=255) ccAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACt > 2:2516543/1‑76 (MQ=255) ccAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACt < 1:5248392/76‑1 (MQ=255) cAGGAGATGGAAGATGCACTGGTTGAAGTACGTTCTCCTTCGGCGCTCGCGTTGGCAGAAATGAAACAGCTGACTc < 1:4184504/76‑1 (MQ=255) aGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCg > 2:4444540/1‑76 (MQ=255) aGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCg < 2:4191283/76‑1 (MQ=255) ggAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCGc < 1:2801926/76‑1 (MQ=255) ggAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCGc < 1:1312954/76‑1 (MQ=255) gagaTGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCGcc > 1:4415909/1‑76 (MQ=255) gagaCGGACAATACACTGGTTGAAGGACGTTATACTTCGACGCGCGCGTTCGCAGAAAAGAAACAGCTCACGCGcc > 2:1426392/1‑76 (MQ=255) | ATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCAGAAAAGAAACAGCTGACTCGCC > NC_000913/1366130‑1366280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |