| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1366184 = | 126 (0.790) | 4 (0.030) | 4/142 | 14.7 | 3.3% | coding (82/669 nt) | pspA | phage shock protein |
| ? | NC_000913 | 1366205 = | 116 (0.770) | coding (103/669 nt) | pspA | phage shock protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 128 total aligned reads displayed.
ATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCA > NC_000913/1366109‑1366258 | aTTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAAc < 2:136483/76‑1 (MQ=255) ttCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAACGCGGAAGATCCACAGAGACTGGtt < 2:1270111/76‑1 (MQ=255) ttCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGtt < 2:1287537/76‑1 (MQ=255) ttCGCGCTTGGCCGACATCGTGAATGCCAGCATCGACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGtt < 2:3912911/76‑1 (MQ=255) tctcGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTc < 2:5551356/76‑1 (MQ=255) tctcGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTc < 2:4271017/76‑1 (MQ=255) tcGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGt < 1:4482722/76‑1 (MQ=255) tcGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGt < 2:1894594/76‑1 (MQ=255) tcGCTTTGCCGACATCGTGAATGCCAACAGCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGt > 1:21667/1‑76 (MQ=255) cGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTc > 2:2801926/1‑76 (MQ=255) gCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCt > 1:4646484/1‑76 (MQ=255) gCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCt < 1:1858260/76‑1 (MQ=255) gCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCt > 2:1964081/1‑76 (MQ=255) gCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCt > 2:2353370/1‑76 (MQ=255) cTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCtg > 2:395022/1‑76 (MQ=255) cTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGCTCGTCtg > 2:5172036/1‑76 (MQ=255) tttGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCtga > 1:142680/1‑76 (MQ=255) ttGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCtgat < 2:2856571/76‑1 (MQ=255) ttGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGATCGTCtgat > 1:2472981/1‑76 (MQ=255) tGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCtgatg < 2:5325377/76‑1 (MQ=255) gCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCtgatga > 1:2674081/1‑76 (MQ=255) gCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCtgatga > 2:2958952/1‑76 (MQ=255) gCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCtgatga < 1:3744637/76‑1 (MQ=255) cGACATCGTGAGTGCCAACATCAACGGTCTGTTAGGGAAAGCGGAAGATCCACAGAGAATGGTTCGTCTGATTATc < 2:48795/76‑1 (MQ=255) cGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATc > 1:2126635/1‑76 (MQ=255) cGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATc > 2:1082006/1‑76 (MQ=255) gACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATcc > 2:2263871/1‑76 (MQ=255) gACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATcc > 1:4189095/1‑76 (MQ=255) aCATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCa > 2:2794460/1‑76 (MQ=255) cATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAg < 1:2958952/76‑1 (MQ=255) aTCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAgg < 1:1050723/76‑1 (MQ=255) aTCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAgg < 2:2898710/76‑1 (MQ=255) tCGTGAATGCCAACATCACCGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGga < 1:3118990/76‑1 (MQ=255) tCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGga < 1:98741/76‑1 (MQ=255) cGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGgag < 1:2656926/76‑1 (MQ=255) gTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGgaga > 1:4128325/1‑76 (MQ=255) tGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAACCTGGTTCGTCTGATGATCCAGGAGAt < 1:4840740/76‑1 (MQ=255) ggAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGAt < 2:25663/75‑1 (MQ=255) gAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGgaga > 1:122635/1‑74 (MQ=255) gAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGgaga < 2:122635/74‑1 (MQ=255) aaTGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATgg < 1:699691/76‑1 (MQ=255) tGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGaa > 1:4389720/1‑76 (MQ=255) tGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGaa < 1:1395408/76‑1 (MQ=255) tGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGaa < 2:4435004/76‑1 (MQ=255) tGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGaa < 1:800343/76‑1 (MQ=255) gCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAg < 1:4109437/76‑1 (MQ=255) gCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGCTTCGTCGCATGATCCAGGAGAGGGCAg > 2:1164770/1‑76 (MQ=255) cAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGaa > 2:2741110/1‑75 (MQ=255) cAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGAt > 1:1474245/1‑76 (MQ=255) aaCATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGaga > 1:4266821/1‑74 (MQ=255) aaCATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATa < 2:4047675/76‑1 (MQ=255) aaCATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATa > 2:4075421/1‑76 (MQ=255) aaCATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATa > 1:2811773/1‑76 (MQ=255) aCATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATac > 2:1040127/1‑76 (MQ=255) aCATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATac > 1:335308/1‑76 (MQ=255) cATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATaca > 1:2482815/1‑76 (MQ=255) aTCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATacac > 1:3449191/1‑76 (MQ=255) tCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACt < 2:5007866/76‑1 (MQ=255) tCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACt > 1:2409332/1‑76 (MQ=255) cGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGtt < 2:1972809/76‑1 (MQ=255) cGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGtt < 1:1964081/76‑1 (MQ=255) gCTCTGTTAGAGAAAGCGGCAGATCCCCCGAAACTGGTTCGTCTGATGATCCAGGAGCTGGAAGATCCACTGGTTg > 1:745206/1‑76 (MQ=255) gCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTg > 1:1242893/1‑76 (MQ=255) gCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTg > 1:4356645/1‑76 (MQ=255) tctGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGAt < 2:1817949/64‑1 (MQ=255) tctGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGAt > 1:1817949/1‑64 (MQ=255) tctGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGaa > 2:4327004/1‑76 (MQ=255) ttAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTAc > 1:3002845/1‑76 (MQ=255) tAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGGAGTACg < 2:4108596/76‑1 (MQ=255) tAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACg < 2:142680/76‑1 (MQ=255) tAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACg > 1:1821729/1‑76 (MQ=255) tAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACg > 1:555862/1‑76 (MQ=255) agatAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGt < 1:4894208/76‑1 (MQ=255) agagAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGt < 2:3450735/76‑1 (MQ=255) gaAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACATTGGTTGAAGTACGTTCt > 1:662280/1‑76 (MQ=255) gaAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCt > 2:2353980/1‑76 (MQ=255) aaaGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTa < 2:414366/76‑1 (MQ=255) aGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACt < 2:2489678/76‑1 (MQ=255) cGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTc < 1:2794460/76‑1 (MQ=255) cGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTc > 1:813015/1‑76 (MQ=255) cGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTc < 2:1872929/76‑1 (MQ=255) cGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTc > 2:174310/1‑76 (MQ=255) aaGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgc > 2:2124508/1‑76 (MQ=255) aaGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgc > 1:4490741/1‑76 (MQ=255) aGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgcg > 1:1623244/1‑76 (MQ=255) gATCCACAGAAACTGGTTCGTCTGATGATCCAGGTGATGGAAGATACACTGGCTGAAGGACGTTCTACTTCGgcgc > 1:4479872/1‑76 (MQ=255) aTCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgcgcg > 2:2135258/1‑76 (MQ=255) tCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgcgcgc > 2:3360235/1‑76 (MQ=255) ccACAGAAACTGGTTCGTCTGATGTTCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgcgcgcg < 2:4768288/76‑1 (MQ=255) ccACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgcgcgcg < 2:4782355/76‑1 (MQ=255) cacaGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgcgcgcgc < 1:5694699/76‑1 (MQ=255) acaGAAACTGGTTCGTCTGATGATACAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgagcgcgag > 1:3396926/1‑74 (MQ=255) caGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGt < 2:4389719/76‑1 (MQ=255) aGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGtt > 1:4031913/1‑76 (MQ=255) gtgaCTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTg < 2:2533547/73‑1 (MQ=255) gAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTg < 2:2860366/76‑1 (MQ=255) aaaCTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTgg < 1:46070/76‑1 (MQ=255) aCTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCa < 1:1040127/76‑1 (MQ=255) cTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgcgc < 2:2063242/64‑1 (MQ=255) cTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGgcgc > 1:2063242/1‑64 (MQ=255) | ATTTTTTCTCGCTTTGCCGACATCGTGAATGCCAACATCAACGCTCTGTTAGAGAAAGCGGAAGATCCACAGAAACTGGTTCGTCTGATGATCCAGGAGATGGAAGATACACTGGTTGAAGTACGTTCTACTTCGGCGCGCGCGTTGGCA > NC_000913/1366109‑1366258 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |