| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,091,572 | 3461 bp→GCATGCGGATCCTCTAGAGTCGACATATG | [rhaD]–rhaB | [rhaD], rhaA, rhaB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4091572 | 4095032 | 3461 | 149 [0] | [0] 173 | [rhaD]–rhaB | [rhaD],rhaA,rhaB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4091571 | 0 (0.000) | 103 (1.070) +GCATGCGGATCCTCTAGAGTCGACATATG |
58/92 | 0.1 | 100% | coding (283/825 nt) | rhaD | rhamnulose‑phosphate aldolase |
| ? | NC_000913 | 4095033 = | 0 (0.000) | intergenic (‑4/‑284) | rhaB/rhaS | rhamnulokinase/RhaS | |||||
Only 100 of 214 total aligned reads displayed.
GGAAGTTCGGAAGTGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4091498‑4091571‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAA > NC_000913/4095033‑4095107 ||||||||||||||||||||||||||||| GGAAGTGCGGAAGTGGGGCCGGCTTCGTTGGTTAACCCCCACAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGC < 1:309329/76‑1 AAGTTCGGAAGTGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCAT < 1:71584/76‑1 AAGTTCGGAAGTGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGCCGCTGTCGACGCAc > 1:207809/1‑75 AGTTCGGAAGTGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATG > 1:2289902/1‑76 GTTCGGAAGTGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGg > 1:5113120/1‑75 GTTCGGAAGTGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGC < 2:2035244/76‑1 GTTCGGAAGTGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGC < 1:2093021/76‑1 TTCGGAAGTGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCG < 2:867295/76‑1 TTCGGAAGTGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCG > 1:3756153/1‑76 TTCGGAAGTGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCG > 1:1873617/1‑76 CGGAAGTGGGGACGGCTTCGTTGGTTAACCCCCACAGAATGTGTTAGCCCGCGCCGTCGCTGTCCACTCATGCGta > 1:4698917/1‑74 CGGAAGTGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGA < 1:5781909/76‑1 CGGAAGTGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGA < 1:632042/76‑1 GGAAGTGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGAT > 2:3327261/1‑76 GAAGTGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATC > 1:300234/1‑76 TGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCT < 1:745452/76‑1 TGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCT < 1:3462259/76‑1 GACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGCCGCATGCGGATCCTCTAGAG > 2:3731264/1‑76 CGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTC > 1:2478432/1‑76 GGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCG > 1:4891793/1‑76 GCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCCGTCGACGCATGCGGATCCTCTCGAGCCGA > 2:446115/1‑76 TTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACA < 2:300234/76‑1 TTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGCCGCTGTCGACGCATGCCGATCCGCTAGCGTCGCCA > 2:3860078/1‑76 GTTGGTTAACCCCCACAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATAT < 1:30762/76‑1 TTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATG > 1:215333/1‑76 TGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGG > 1:217859/1‑76 TGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGG < 1:2420282/76‑1 GGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGT < 2:2730429/76‑1 TAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGAT < 1:3908326/76‑1 AACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATC < 2:2902226/76‑1 ACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCC > 1:4301318/1‑76 CCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCT < 1:2795550/76‑1 CCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTG < 2:1560582/76‑1 CCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCT < 2:5461003/76‑1 AAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGA < 1:2879493/76‑1 gagTGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATT < 2:7448/73‑1 AATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTT > 1:1027434/1‑76 AATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTT < 1:3971399/76‑1 AATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTT < 2:2127728/76‑1 AATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTT < 2:3488026/76‑1 ATGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTC > 2:4444058/1‑76 TGTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCA > 1:2232209/1‑76 GTGGTGGCGCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCAT < 2:324949/76‑1 GTGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCAT < 2:4974029/76‑1 gGGTGGCCGGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATT < 2:5780500/75‑1 gGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATT < 2:2535665/75‑1 TGGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATT > 2:3584895/1‑76 GGTAGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTA < 2:2226531/76‑1 AGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGA > 1:3340758/1‑76 AGCCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGA < 1:4155862/76‑1 CCCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAAGTTCATTACGACC > 2:4539833/1‑76 CCGCGCCGTCGCTGTCGACGCATGCTGATCCTCTAGAGTCGACATATGGTGATCCTGATGCATTTCATTACGACCA > 2:4699455/1‑76 CCGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCA > 2:4509746/1‑76 CGCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAG > 1:1291740/1‑76 GCGCCGTCGCTGTCGACGCATGCGGCTCCTCTAGCGTCGACATATGGTGCTCCTGCTGAATTTCATTACGAACAGT > 1:4545879/1‑76 GCGCCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGT > 1:5627419/1‑76 CCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTA < 2:560567/76‑1 CCGTCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTA > 1:165277/1‑76 TCGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAA < 1:4503383/76‑1 TCGCGGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAA < 2:5249769/76‑1 CGCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAA > 2:5384111/1‑76 GCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAG > 2:227830/1‑76 GCTGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCCGAATTTCATTACGACCAGTCTAAAAAG > 2:1367333/1‑76 TGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCG > 1:4681556/1‑76 TGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCG < 1:1894946/76‑1 TGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCG > 2:651301/1‑76 TGTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCG < 2:4254327/76‑1 GTCGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGC > 1:829459/1‑76 CGACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCT < 1:26767/76‑1 GACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTG < 2:4668426/76‑1 GACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTG > 1:953804/1‑76 gCGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGA < 2:773372/75‑1 ACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGA > 1:3567655/1‑76 ACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGA < 2:2357692/76‑1 ACGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGA < 2:1521844/76‑1 CGCATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAA < 2:4039961/76‑1 CATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATT < 1:4776226/76‑1 ATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTC < 2:925950/76‑1 ATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTC > 1:5245150/1‑76 ATGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTC < 2:3608011/76‑1 TGCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCG > 1:2000424/1‑76 GCGGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGC > 2:1857369/1‑76 GGATCCTCTAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGA > 2:839639/1‑76 CTATAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGCCCTTCTC < 1:3612417/76‑1 TAGAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCG > 2:46286/1‑76 GAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGATCTTCTCGTT > 1:2914478/1‑76 GAGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTT > 2:3125955/1‑76 AGTCGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTA < 2:4849387/76‑1 GTCGACATAGGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTAC < 2:1947990/76‑1 tctACATATGTTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACT < 2:5113119/73‑1 CGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTG < 1:4509747/76‑1 CGACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTG < 2:2387217/76‑1 GACATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGAGCCTGAATTCGCGACCTTCTCGGTACTag > 2:2159728/1‑74 CATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACA < 1:1398806/76‑1 CATATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACA > 1:4571244/1‑76 ATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGA > 1:1444976/1‑76 ATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGA > 1:1756010/1‑76 ATGGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGA < 2:1159670/76‑1 TGGTGATCGTGCTGACTTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAA < 2:2850156/76‑1 GGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAA > 1:4065914/1‑76 ||||||||||||||||||||||||||||| GGAAGTTCGGAAGTGGGGACGGCTTCGTTGGTTAACCCCCAAAGAATGTGGTAGCCCGCGCCGTCGCTGTCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4091498‑4091571‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAA > NC_000913/4095033‑4095107 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |