| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,091,572 | 3461 bp→GCATGCGGATCCTCTAGAGTCGACATATG | [rhaD]–rhaB | [rhaD], rhaA, rhaB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4091572 | 4095032 | 3461 | 149 [0] | [0] 173 | [rhaD]–rhaB | [rhaD],rhaA,rhaB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4091571 | 0 (0.000) | 103 (1.070) +GCATGCGGATCCTCTAGAGTCGACATATG |
58/92 | 0.1 | 100% | coding (283/825 nt) | rhaD | rhamnulose‑phosphate aldolase |
| ? | NC_000913 | 4095033 = | 0 (0.000) | intergenic (‑4/‑284) | rhaB/rhaS | rhamnulokinase/RhaS | |||||
Only 100 of 173 total aligned reads displayed.
CTCGTAACGCGCCAGCATCACGCGCCCACTGGATGCGCCGAGATCGACGGCGACACAATTGCGAAAGGTCATAATGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAA > NC_000913/4094958‑4095108 | tggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgg > 1:217859‑M2/76‑76 (MQ=255)tggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgg < 1:2420282‑M2/1‑1 (MQ=255) ggttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGt < 2:4021102‑M2/2‑1 (MQ=255) gttaacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTg > 1:2456423‑M2/74‑76 (MQ=255) taacccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGAt > 1:2175305‑M2/72‑76 (MQ=255) cccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCct > 2:2934266‑M2/69‑76 (MQ=255) cccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCct < 1:2795550‑M2/8‑1 (MQ=255) ccccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCctg < 2:1560582‑M2/9‑1 (MQ=255) ccaaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCctgct < 2:5461003‑M2/11‑1 (MQ=255) aaagaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGa < 1:2879493‑M2/13‑1 (MQ=255) gaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAAtt < 2:3219961‑M2/16‑1 (MQ=255) gaatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTCCTGAAtt > 2:924878‑M2/61‑76 (MQ=255) aatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAAttt > 1:1027434‑M2/60‑76 (MQ=255) aatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAAttt < 2:2127728‑M2/17‑1 (MQ=255) aatgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAAttt < 2:3488026‑M2/17‑1 (MQ=255) atgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTc > 2:4444058‑M2/59‑76 (MQ=255) tgtgttcgcccgcgccgtcgctgtcgccgcatgcggatcctctcgagtcgacatatgGTGATCCTGCTGAATTTCa < 1:1879092‑M2/19‑1 (MQ=255) tgtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCa > 1:2232209‑M2/58‑76 (MQ=255) gtggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCAt < 2:4974029‑M2/20‑1 (MQ=255) tggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCAtt < 1:4213132‑M2/21‑1 (MQ=255) gggtggccggcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCAtt < 2:5780500‑M2/21‑1 (MQ=255) gggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCAtt < 2:2535665‑M2/21‑1 (MQ=255) ggtagcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTa < 2:2226531‑M2/22‑1 (MQ=255) agcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGa > 1:3340758‑M2/52‑76 (MQ=255) agcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGa < 2:2857818‑M2/25‑1 (MQ=255) agcccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGa > 1:4668427‑M2/52‑76 (MQ=255) ccgcgccgtcgctgtcgacgcatgctgatcctctagagtcgacatatgGTGATCCTGATGCATTTCATTACGACCa > 2:4699455‑M2/49‑76 (MQ=255) ccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCa > 2:4523366‑M2/49‑76 (MQ=255) ccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCa < 2:3541924‑M2/28‑1 (MQ=255) ccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCa > 2:971653‑M2/49‑76 (MQ=255) ccgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCa > 1:1116567‑M2/49‑76 (MQ=255) cgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAg > 2:2365005‑M2/48‑76 (MQ=255) cgcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAg > 2:3336171‑M2/48‑76 (MQ=255) gcgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGt > 2:4315745‑M2/47‑76 (MQ=255) cgccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTc > 2:809503‑M2/46‑76 (MQ=255) gccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCt > 1:301030‑M2/45‑76 (MQ=255) gccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCt > 1:3082268‑M2/45‑76 (MQ=255) ccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTa > 1:165277‑M2/44‑76 (MQ=255) ccgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTa < 2:560567‑M2/33‑1 (MQ=255) cgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGCCCAGTCTaa > 2:1376‑M2/43‑76 (MQ=255) cgtcgctgtcgacgcatgcggatcctctagagtcgacatatgGAGATCCTACTGAATTTCATTACGACTAGTCTaa > 1:5728809‑M2/43‑76 (MQ=255) gtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTGCGACCAGTCTaaa < 2:1529495‑M2/35‑1 (MQ=255) gtcgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTaaa > 2:3052237‑M2/42‑76 (MQ=255) tcgcggtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTaaaa < 2:5249769‑M2/36‑1 (MQ=255) cgctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTaaaaa > 2:5384111‑M2/40‑76 (MQ=255) gctgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAg > 2:227830‑M2/39‑76 (MQ=255) tgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAgcg > 1:4681556‑M2/37‑76 (MQ=255) tgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAgcg < 2:4254327‑M2/40‑1 (MQ=255) tgtcgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAgcg < 1:1894946‑M2/40‑1 (MQ=255) gtcgacgcatgcggatcctctagagtcgacatatgGTTATCCTGCTAAATTTCATTACGACCAGTCTAAAAAgcgc < 1:3898188‑M2/41‑1 (MQ=255) cgacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCt < 1:26767‑M2/43‑1 (MQ=255) gacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTg < 2:4668426‑M2/44‑1 (MQ=255) gacgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTg < 2:2289902‑M2/44‑1 (MQ=255) acgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGa > 1:3567655‑M2/32‑76 (MQ=255) acgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCGAAAAAGCGCCTGa > 1:5528990‑M2/32‑76 (MQ=255) cgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGaa > 2:3654695‑M2/31‑76 (MQ=255) cgcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGaa < 2:4039961‑M2/46‑1 (MQ=255) gcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAAt > 1:831052‑M2/30‑76 (MQ=255) gcatgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAAt > 1:2023637‑M2/30‑76 (MQ=255) catgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAAtt < 1:5119873‑M2/48‑1 (MQ=255) catgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAAtt < 1:4776226‑M2/48‑1 (MQ=255) catgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAAtt > 1:4509160‑M2/29‑76 (MQ=255) catgcggatcctctaaagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAAtt < 1:4374932‑M2/48‑1 (MQ=255) atgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTc < 2:276113‑M2/49‑1 (MQ=255) atgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTc > 1:3443668‑M2/28‑76 (MQ=255) atgcggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTc > 1:5245150‑M2/28‑76 (MQ=255) ggatcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGa > 2:839639‑M2/24‑76 (MQ=255) tcctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCt > 2:3605811‑M2/21‑76 (MQ=255) cctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCtt < 2:4478067‑M2/57‑1 (MQ=255) cctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCtt < 2:1167684‑M2/57‑1 (MQ=255) ctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTtc < 2:4561778‑M2/58‑1 (MQ=255) ctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTtc < 2:2706223‑M2/58‑1 (MQ=255) ctctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTtc < 2:2093042‑M2/58‑1 (MQ=255) tctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGAcc < 1:709381‑M2/55‑1 (MQ=255) tctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGAcc > 2:709381‑M2/18‑72 (MQ=255) ctatagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGCCCTtctc < 1:3612417‑M2/60‑1 (MQ=255) ctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTtctc < 2:753422‑M2/60‑1 (MQ=255) ctagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTtctc < 1:3655953‑M2/60‑1 (MQ=255) tagagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCg > 2:46286‑M2/16‑76 (MQ=255) agagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGt > 1:4536721‑M2/15‑76 (MQ=255) gagtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGATCTTCTCGtt > 1:2914478‑M2/14‑76 (MQ=255) agtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTa < 2:4849387‑M2/64‑1 (MQ=255) ntcgacatatgGTGATCCTGCTGAATTTCATTACGACCCGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTAc > 1:1947990‑M2/12‑76 (MQ=255) gtcgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTAc > 1:3953757‑M2/12‑76 (MQ=255) gtcgacataggGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTAc < 2:1947990‑M2/65‑1 (MQ=255) tctacatatgTTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACt < 2:5113119‑M2/66‑1 (MQ=255) cgacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTg < 1:4509747‑M2/67‑1 (MQ=255) cgacataggGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTg < 1:1352685‑M2/67‑1 (MQ=255) gacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGa > 2:5782329‑M2/9‑76 (MQ=255) gacatatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGAGCCTGAATTCGCGACCTTCTCGGTactag > 2:2159728‑M2/9‑74 (MQ=255) catatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACa > 1:4569264‑M2/7‑76 (MQ=255) catatgGTGATCCTGCTGAATTTCATTACGACCAGGCTAAAAAGCGACTGAATTCGCGACCGGCTCGTTACTGACa < 1:1425999‑M2/70‑1 (MQ=255) tatgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAgg > 1:4092644‑M2/5‑76 (MQ=255) atgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGa > 1:1756010‑M2/4‑76 (MQ=255) atgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGa > 1:1444976‑M2/4‑76 (MQ=255) atgGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGa < 2:1159670‑M2/73‑1 (MQ=255) gGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGaaa > 1:4065914‑M2/2‑76 (MQ=255) gGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGaaa > 1:775443‑M2/2‑76 (MQ=255) gtgATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGaaaa > 1:5005205/1‑76 (MQ=255) gtgATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGaaaa < 2:2129355/76‑1 (MQ=255) | CTCGTAACGCGCCAGCATCACGCGCCCACTGGATGCGCCGAGATCGACGGCGACACAATTGCGAAAGGTCATAATGTGATCCTGCTGAATTTCATTACGACCAGTCTAAAAAGCGCCTGAATTCGCGACCTTCTCGTTACTGACAGGAAAA > NC_000913/4094958‑4095108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |