| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4169328 = | 80 (0.500) | 111 (0.810) +GGAATTAATT |
75/130 | 0.3 | 61.6% | noncoding (113/120 nt) | rrfB | 5S ribosomal RNA |
| ? | NC_000913 | = 4169500 | NA (NA) | intergenic (+165/‑136) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase | |||||
Only 100 of 225 total aligned reads displayed.
CATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC > NC_000913/4169253‑4169403 | atttgaacgttgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccc < 1:383489‑M1/1‑1 (MQ=255) gaaggttgcgaagcagcggccggggggggggcgggcgggccgcccgccataaactgccaggaattaattccCCAgg > 2:3118532‑M1/72‑76 (MQ=255) gaacgttgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAgg < 2:3890898‑M1/5‑1 (MQ=255) gaacgttgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAgg < 1:5694514‑M1/5‑1 (MQ=255) acgttgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggtattaattccCCAGGCa < 2:4819281‑M1/7‑1 (MQ=255) ttgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCa < 2:5661978‑M1/10‑1 (MQ=255) ttgcgaagcaacggcccggaggggggcgggcaggacgcccgccataaactggcaggaattaattccCCACGcatta < 1:1941952‑M1/10‑3 (MQ=255) tgcgaagcaccggccggggggggggggggcaggacgcccgccataaactgccaggaattaattccCCATGCATCaa > 1:5769349‑M1/66‑76 (MQ=255) tgcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCaa < 2:1128216‑M1/11‑1 (MQ=255) gcgaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCaaa < 1:3430388‑M1/12‑1 (MQ=255) gaagcaacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCCGGCATCCAATa < 2:1538714‑M1/14‑1 (MQ=255) gAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATa < 2:1968143/76‑1 (MQ=31) gAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGACATCAAATa < 2:1444088/76‑1 (MQ=9) agcaacggcccggagggtggcgggcaggacgcccgccatcacctgccaggaattaactccACAGGGAACAaaaaaa < 2:321292‑M1/16‑1 (MQ=255) aGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGACATCAAATaaa < 1:680171/76‑1 (MQ=9) tGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGACATCAAATAAAAc < 2:1340876/76‑1 (MQ=9) aacggcccggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACg < 1:4772774‑M1/19‑1 (MQ=255) aaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGaa > 2:2887440/1‑76 (MQ=35) cgcgGTAGCGCCGCTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAg < 2:2489048/76‑1 (MQ=255) gCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAgg < 2:2162537/76‑1 (MQ=35) cgggggggggggcggggaggcctcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAgg > 2:685042‑M1/53‑76 (MQ=255) cGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCt < 1:1134392/76‑1 (MQ=35) cGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCt > 2:4153388/1‑76 (MQ=35) gggggtggggggccgcgccgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTc > 1:2564129‑M1/50‑76 (MQ=255) ggagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTc < 1:3317343‑M1/27‑1 (MQ=255) gTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTc > 1:829700/1‑76 (MQ=35) tAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCa < 1:1458226/76‑1 (MQ=35) tAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCa < 1:4035323/76‑1 (MQ=35) gagggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCa < 1:2031485‑M1/28‑1 (MQ=255) agggtggcgggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAg < 1:5231767‑M1/29‑1 (MQ=255) ggggggcggtcagcccgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGt > 1:3747102‑M1/47‑76 (MQ=255) gggggggggcgggccccccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTc > 1:5171877‑M1/46‑76 (MQ=255) ggggcgggcaggccgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCg > 1:170273‑M1/45‑76 (MQ=255) gcCGATGGTAGTGTGGGGTCTCCCCATGTGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCg < 2:5304875/76‑1 (MQ=25) gcCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCg < 1:5385529/76‑1 (MQ=35) gggggggcgggacccccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGa > 2:3317343‑M1/44‑76 (MQ=255) cGATGCTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCgca > 1:1108052/1‑74 (MQ=255) gATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGaaa < 2:3142920/76‑1 (MQ=39) aTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAg < 1:4920020/76‑1 (MQ=255) gggcaggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGa < 1:2206556‑M1/37‑1 (MQ=255) ggccaggccccccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGa > 1:5134408‑M1/40‑76 (MQ=255) gTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACt > 1:1008292/1‑76 (MQ=40) caggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTg < 1:634188‑M1/40‑1 (MQ=255) ggacgcccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGaa < 2:5197108‑M1/34‑1 (MQ=255) ggtgGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGc < 2:1111641/75‑1 (MQ=255) gacgcccgccataaactgccaggaattaattccCCAGGCa < 1:1074331‑M1/7‑1 (MQ=255) cgcccgccataaactgccaggaattaattccCCAGGCATCAAATa > 1:849651‑M1/32‑45 (MQ=255) cgcccgccataaactgccaggaattaattccCCAGGCATCAAATa < 2:849651‑M1/14‑1 (MQ=255) ccgccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTc > 2:3430388‑M1/29‑76 (MQ=255) cgcaataacctgccaggaattaattccCCAGGCATAAAAAAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCg > 1:1349987‑M1/28‑76 (MQ=255) gccataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGt < 1:3550192‑M1/50‑1 (MQ=255) tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGttt > 2:5626496/1‑76 (MQ=40) cataaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGttt < 1:3879028‑M1/52‑1 (MQ=255) cccATGCGAGAGTGGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTa > 1:45642/1‑76 (MQ=255) ccATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTAt > 2:5233740/1‑76 (MQ=35) aaactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTc > 1:3025664‑M1/22‑52 (MQ=255) aactgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATc < 1:4664618‑M1/56‑1 (MQ=255) actgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCt > 2:3997266‑M1/20‑76 (MQ=255) aTGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCt > 1:4130191/1‑76 (MQ=35) tGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtg > 2:2354527/1‑76 (MQ=34) ggCGAGGGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtg < 2:148937/75‑1 (MQ=255) tgccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtgt < 2:5343258‑M1/59‑1 (MQ=255) gccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtgtt < 2:4561647‑M1/60‑1 (MQ=255) cGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCtgat > 2:2291453/1‑74 (MQ=21) ccaggaattaattccCCAGGCATCAAATAAAACGaa > 2:2659568‑M1/16‑36 (MQ=255) ccaggaattaattccCCAGGCATCAAATAAAACGaa < 1:2659568‑M1/21‑1 (MQ=255) ccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCa < 1:1530190‑M1/28‑1 (MQ=255) ccaggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGaaa > 2:1293700‑M1/16‑50 (MQ=255) caggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGAGCCTTTCGTTTTATCtgttgt < 1:3296602‑M1/62‑1 (MQ=255) agagTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGCCGAAAGACTGGGCCTTTCGCTTTATCtgttct > 2:5713132/1‑74 (MQ=11) gagTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTgttgtt < 1:1676986/76‑1 (MQ=35) aggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCg < 2:5551667‑M1/32‑1 (MQ=255) aggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTgttgtt < 1:1447179‑M1/63‑1 (MQ=255) ggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGtttt < 1:366695‑M1/53‑1 (MQ=255) ggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGtttt > 2:366695‑M1/13‑65 (MQ=255) ggaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgttt < 1:4997340‑M1/64‑1 (MQ=255) agTAGGGAGCTGCCAGGCATCAAATAAAGCGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgttt < 2:1725548/76‑1 (MQ=255) gaattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgtttg < 2:2742338‑M1/65‑1 (MQ=255) gTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgtttg < 2:4055796/76‑1 (MQ=35) aattaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGttgtttgt > 2:4693319‑M1/11‑76 (MQ=255) attaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTc > 1:1871236‑M1/10‑76 (MQ=255) ttaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTc > 2:1480956‑M1/9‑56 (MQ=255) ttaattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCg > 1:1649039‑M1/9‑76 (MQ=255) ggAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCgg < 2:1680666/76‑1 (MQ=35) aattccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGt > 1:3098249‑M1/7‑76 (MQ=255) attccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTg > 2:1676372‑M1/6‑45 (MQ=255) atgccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGCCTGGGCCTTTCGTTTTATCTGTTGTTTGTCGgtt > 1:4344677‑M1/6‑75 (MQ=255) ttccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGa > 1:4449141‑M1/5‑76 (MQ=255) ttccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGa < 2:612766‑M1/72‑1 (MQ=255) aCTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGa > 2:2239425/1‑76 (MQ=35) tccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGaa < 1:3583855‑M1/73‑1 (MQ=255) tccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGaa < 2:1159409‑M1/73‑1 (MQ=255) cTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGaa < 2:4976495/76‑1 (MQ=35) cTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGaa < 1:98143/76‑1 (MQ=35) tGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAc < 1:4072356/76‑1 (MQ=35) ccCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTg < 1:1289818‑M1/40‑1 (MQ=255) gCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAAcc > 2:5518824/1‑75 (MQ=25) cCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACg > 2:4178099‑M1/2‑76 (MQ=255) ccAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGc < 2:3660129/76‑1 (MQ=35) ccAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGc < 1:3376031/76‑1 (MQ=35) | CATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGC > NC_000913/4169253‑4169403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |