| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 244129 = | 174 (1.090) | 160 (1.160) +ACTTCGCCCA |
50/130 | 1.9 | 51.7% | intergenic (+8/‑198) | gmhA/yafJ | phosphoheptose isomerase/putative amidotransferase |
| ? | NC_000913 | 757626 = | 172 (1.080) | coding (715/717 nt) | sdhB | succinate dehydrogenase iron sulfur protein | |||||
Only 100 of 394 total aligned reads displayed.
TCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATC > NC_000913/244055‑244204 | gagaTTCACATTAAAGCGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGc > 2:3838312/1‑76 (MQ=255) agaTTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGcc > 1:1025473/1‑76 (MQ=255) gaTTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCg > 2:5291495/1‑76 (MQ=255) ttCACATTAACGTGATCCATATCCTGATCCAGTTGATTGAAAAGGAGATGGTTAAGTAAGTCGGGCGTAGGCCGGa < 2:3415746/76‑1 (MQ=255) ttCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGTAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGa < 2:3223890/76‑1 (MQ=255) ttCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGa > 1:3343061/1‑76 (MQ=255) tCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGAt < 2:2164185/76‑1 (MQ=255) tCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGAt < 1:5587893/76‑1 (MQ=255) tCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGAt < 1:500949/76‑1 (MQ=255) aTTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGa < 2:1761002/76‑1 (MQ=255) tAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACg > 1:1333406/1‑76 (MQ=255) aaaGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGt < 1:5058547/76‑1 (MQ=255) taGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGCCCGGATAAGACGtt > 2:282415/2‑76 (MQ=255) aGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGctt > 2:1115755/1‑76 (MQ=255) tGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAc > 2:1949349/1‑76 (MQ=255) cATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAcgccgc > 1:224731/1‑76 (MQ=255) atatCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCCCa > 2:765860/1‑76 (MQ=255) atCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATc < 2:3292748/76‑1 (MQ=255) atCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATc > 1:4429162/1‑76 (MQ=255) ccTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCg < 2:3003977/76‑1 (MQ=255) cTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCCTCCgg > 2:5544713/1‑76 (MQ=255) gATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCa < 1:3292513/76‑1 (MQ=255) gATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCCGCa > 2:14731/1‑76 (MQ=255) aTCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCAt < 2:3784213/76‑1 (MQ=255) aTCCAGTTGATTGAAAAAGAGATGGTTAAGCAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCAt > 1:1216377/1‑76 (MQ=255) tatgcgcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCAtt > 1:5420391‑M1/40‑76 (MQ=255) tatgcgcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCAtt > 1:4543123‑M1/40‑76 (MQ=255) tCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCAtt > 1:3924371/1‑76 (MQ=255) atgcgcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCAttt > 2:4954354‑M1/39‑76 (MQ=255) gcgcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTtgt > 1:3792609‑M1/37‑76 (MQ=255) gcgtcttgtcaggtctacggtttatgggcgaagtGTAGGCCGGATAGGCCGTTTACGCCGCATCGGGCATTTGTgc > 1:2587534‑M1/35‑76 (MQ=255) gcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgc < 1:1785966‑M1/42‑1 (MQ=255) gcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCACTTGTgc < 1:2791392‑M1/42‑1 (MQ=255) tgattgaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgcg < 1:4048592/76‑1 (MQ=255) cgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgcg > 1:2134025‑M1/34‑76 (MQ=255) gattgaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgcgc > 2:3065784/1‑76 (MQ=255) cttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctg > 1:1413066‑M1/31‑76 (MQ=255) ttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctga < 1:569386‑M1/47‑1 (MQ=255) tatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGcgctgct > 2:5844891‑M1/29‑74 (MQ=255) tatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgat > 1:4888837‑M1/29‑76 (MQ=255) tatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgat > 2:4290449‑M1/29‑76 (MQ=255) atcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatg > 2:2126806‑M1/28‑76 (MQ=255) atcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatg < 2:2266086‑M1/49‑1 (MQ=255) tcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgc < 1:3059138‑M1/50‑1 (MQ=255) caggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcc < 2:3462139‑M1/51‑1 (MQ=255) aggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcct > 2:3558364‑M1/25‑76 (MQ=255) aaGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcct > 2:5473364/1‑76 (MQ=255) ggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctg < 2:4585791‑M1/53‑1 (MQ=255) agagATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctg < 2:3127597/76‑1 (MQ=255) agaTGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgat < 1:3090586/76‑1 (MQ=255) agaTGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGccgatgcccgat > 2:5141740/1‑76 (MQ=255) cgacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatg > 2:5814405‑M1/21‑76 (MQ=255) tgcggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatgc > 2:889972‑M1/20‑76 (MQ=255) tacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatgc < 1:1158480‑M1/57‑1 (MQ=255) tacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatgc < 1:985542‑M1/57‑1 (MQ=255) cggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGa > 1:1103972‑M1/18‑76 (MQ=255) cggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGa > 2:4477706‑M1/18‑76 (MQ=255) ggtttatgggcgaagtGTAGACCGGATAAGACGTTTACTCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGAc > 2:4677853‑M1/17‑76 (MQ=255) ggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGAc < 1:5338090‑M1/60‑1 (MQ=255) ggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGAc > 2:2956899‑M1/17‑76 (MQ=255) ggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGAc < 1:713787‑M1/60‑1 (MQ=255) ggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGATGATGCCTGATGCGAc < 1:4989752‑M1/60‑1 (MQ=255) gTTAAGGAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGCTGCGAc > 2:3651432/1‑76 (MQ=255) ttAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACg > 2:5655760/1‑76 (MQ=255) tttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGc < 1:1572878‑M1/62‑1 (MQ=255) taagtaagTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGc > 1:5828093/1‑76 (MQ=255) ttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCt > 1:1623506‑M1/14‑76 (MQ=255) ttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCt > 2:2215267‑M1/14‑76 (MQ=255) ttatgggcgaaggGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCt > 2:1369019‑M1/14‑76 (MQ=255) atgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGa < 1:3456559‑M1/65‑1 (MQ=255) atgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGa < 1:4133488‑M1/65‑1 (MQ=255) atgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGa < 1:1522548‑M1/65‑1 (MQ=255) atgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGa > 2:4893326‑M1/12‑76 (MQ=255) atgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCCGATGCGACGCtgg < 2:2675567‑M1/65‑2 (MQ=255) atgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGACGCCTGATGCGACGCTGa < 2:4374170‑M1/65‑1 (MQ=255) gggcgaagtGTAGACCGGCTACGACGTTTACGCCGCATCCGGCATTTGTGCGCTGACGCCTGATGCGCCGCTGAcg < 2:4119111‑M1/67‑1 (MQ=255) gggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGaca > 1:3699832‑M1/10‑75 (MQ=255) gggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcg < 1:3549873‑M1/67‑1 (MQ=255) aagtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcg > 2:185530/1‑76 (MQ=255) agtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgc < 1:5177548/76‑1 (MQ=255) agtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgc < 1:4643747/76‑1 (MQ=255) gcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgcg < 2:2449415‑M1/69‑1 (MQ=255) gcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgcg < 1:844123‑M1/69‑1 (MQ=255) gcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgcg > 1:5497956‑M1/8‑76 (MQ=255) gcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgcg > 2:1636092‑M1/8‑76 (MQ=255) tCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGt < 1:1932850/76‑1 (MQ=255) tCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGt > 1:802119/1‑76 (MQ=255) cgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGt < 1:3183817‑M1/70‑1 (MQ=255) gaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTc < 1:2435992‑M1/71‑1 (MQ=255) tGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCt > 2:254248/1‑76 (MQ=255) aagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCt < 1:4314379‑M1/72‑1 (MQ=255) aagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCt > 2:1197397‑M1/5‑76 (MQ=255) aagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCt > 2:2380594‑M1/5‑76 (MQ=255) aagtGGAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCt > 2:4774500‑M1/5‑76 (MQ=255) ggCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCtt > 1:4818636/1‑76 (MQ=255) gtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTa < 1:916156‑M1/74‑1 (MQ=255) gtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTa < 1:5229298‑M1/74‑1 (MQ=255) gtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTa < 2:730705‑M1/74‑1 (MQ=255) gTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATc > 2:4350837/1‑76 (MQ=255) gTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATc > 2:5113035/1‑76 (MQ=255) | TCAGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATC > NC_000913/244055‑244204 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |