New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 731453	NA (NA)	7 (0.050)	7/142	12.9	NA	coding (2648/4194 nt)	rhsC	RhsC
	?	NC_000913	= 731461	NA (NA)					coding (2656/4194 nt)	rhsC	RhsC
Rejected: Coverage evenness skew score above cutoff.

TACAGCTACAGCACCACCGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTAACCGCCTG  >  NC_000913/731434‑731535                            |                                                                           gccagctccagcACCACCGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGtata                            <  2:2923555/74‑1 (MQ=9)   cagctacagcACCACCGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGCATAcc                          >  2:4645452/1‑76 (MQ=21)   cagcgacagcACCCCCGGCTGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATAcc                          <  1:964682/76‑1 (MQ=11)    agctacagcACCACCGGCAGGCTGACCGGCGTTCACACCACCGCAGCGCATCCGGATATCCGCATCCCGcataacc                         >  1:1641732/1‑73 (MQ=11)     gctacagcACCACCGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACcac                        >  1:3039070/1‑76 (MQ=34)      ctacagcACCACCGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACcaca                       <  1:5603222/76‑1 (MQ=35)      ctacagcACCACCGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACcaca                       >  2:2873903/1‑76 (MQ=34)      cgacagcACCCCCGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACcaca                       <  2:3764317/74‑1 (MQ=255)        acagcACCACCGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGa                     >  2:1856429/1‑76 (MQ=34)         cagcACCCCCGGCGGGCGGACCGGCGTTCACACCCCCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGAc                    <  2:5602381/76‑1 (MQ=11)         cagcACCACCGGCAGGCTGACCGGCGTTCACCCCACCGCAGCGAATCTGGATATCCGCATCCCGCATACCACAGAc                    >  1:1539694/1‑76 (MQ=255)          cgcACCACCTGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATAACACAGAcc                   <  1:717780/75‑1 (MQ=11)          agcCCCCCCGGCGGGCTGACCGGCGTTCACACCCCCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGAcc                   <  2:3506992/76‑1 (MQ=11)          agcACCACCGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGAcc                   <  1:3779856/76‑1 (MQ=35)          agcACCACCGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGAcc                   >  1:4955542/1‑76 (MQ=35)          agcACCACCGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGAcc                   <  1:920757/76‑1 (MQ=35)           gcACCACCGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGAccc                  <  2:3466713/76‑1 (MQ=35)            ccccaccGGCGGGCGGCCCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCg                 <  2:5119990/74‑1 (MQ=11)            caccgcCGGCAGGCTGAGCGGCGTGCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCg                 <  2:876768/76‑1 (MQ=11)            caccacCGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCg                 >  2:2531236/1‑76 (MQ=34)            caccacCGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCg                 <  1:995995/76‑1 (MQ=35)             cccaccGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCgg                <  1:2242605/75‑1 (MQ=25)             accaccGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCGGGATATCCGCATCCCGTATACCACAGACCCgg                >  2:1261806/1‑76 (MQ=21)              ccaccGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGc               >  2:3209010/1‑76 (MQ=35)              ccaccGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGc               >  2:4352600/1‑76 (MQ=34)               caccGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCa              <  1:5594755/76‑1 (MQ=35)                cccGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAg             <  1:5728742/75‑1 (MQ=25)                accGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAg             >  1:1324209/1‑76 (MQ=34)                 ccGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAgg            >  1:5620905/1‑76 (MQ=35)                   ggCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTa          >  2:2154791/1‑76 (MQ=34)                   ggCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTa          >  1:2503616/1‑76 (MQ=34)                   ggCAGGCGGCCCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTa          <  2:2665586/76‑1 (MQ=255)                    gCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTaa         >  2:121437/1‑76 (MQ=34)                     cAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACcac                        <  2:704950/60‑1 (MQ=35)                     cAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACcac                        >  1:704950/1‑60 (MQ=38)                      cggCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTAAcc       <  1:121437/75‑1 (MQ=25)                      aGGCTGACCGGCGTTCACCCCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTAAcc       <  2:2088930/76‑1 (MQ=25)                      aGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTAAcc       <  2:4604689/76‑1 (MQ=35)                       ggCTGACCGGCGTTCCCACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTAACCg      <  2:2487476/76‑1 (MQ=25)                        gCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTAACCGc     <  1:4373801/76‑1 (MQ=35)                        gCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTAACCGc     >  2:2764296/1‑76 (MQ=34)                        gCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTAACCGc     >  1:2106818/1‑76 (MQ=34)                        gCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTAACCGc     <  1:4761440/76‑1 (MQ=35)                          tGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTAACCGccc   >  2:3733247/1‑75 (MQ=21)                          tGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTAACCGccc   >  1:924815/1‑75 (MQ=25)                           gACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCCTCCCGTATACACCAGACCCGGCGGGGGACAGCCTg  >  1:5650814/1‑76 (MQ=11)                           gACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTAACCGCCTg  <  1:3531167/76‑1 (MQ=35)                           gACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTAACCGCCTg  >  1:3386074/1‑76 (MQ=35)                           gACCGCCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTAACCGCCTg  <  1:1533876/76‑1 (MQ=25)                            |                                                                           TACAGCTACAGCACCACCGGCAGGCTGACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATACCACAGACCCGGCAGGTAACCGCCTG  >  NC_000913/731434‑731535

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.