Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 66,533 | 3540 bp→CCCGAGACCCGCACGCGTCGACCTGCA | [araD]–araB | [araD], araA, araB |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 66533 | 70072 | 3540 | 130 [0] | [0] 157 | [araD]–araB | [araD],araA,araB |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 66532 | 0 (0.000) | 83 (0.820) +CCCGAGACCCGCACGCGTCGACCTGCA |
49/96 | 0.6 | 100% | coding (19/696 nt) | araD | L‑ribulose‑5‑phosphate 4‑epimerase |
? | NC_000913 | 70073 = | 0 (0.000) | intergenic (‑25/‑314) | araB/araC | L‑ribulokinase/transcriptional regulator for ara operon |
Only 100 of 157 total aligned reads displayed.
CAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGCTAT > NC_000913/69998‑70148 | gacgaggttgtgttttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcag < 2:640387‑M2/1‑1 (MQ=255) gaccaggttgtgttttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgccctgcag > 2:4480716‑M2/76‑76 (MQ=255) ccaggttgtgttttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGt < 1:3510774‑M2/3‑1 (MQ=255) aggttgtgttttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGGAt > 1:4852282‑M2/72‑76 (MQ=255) ttgtgttttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGga > 2:2545220‑M2/69‑76 (MQ=255) ttgtgttttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGga < 1:3062186‑M2/8‑1 (MQ=255) ttgtgttttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGga < 2:3035032‑M2/8‑1 (MQ=255) ttgtgttttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGga > 2:3606068‑M2/69‑76 (MQ=255) tggggcggcgccaggttgggttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACa < 2:1600504‑M2/14‑1 (MQ=255) ttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgccGGTATGGAGAAACAg > 2:2432892‑M2/62‑76 (MQ=255) ttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacccgccGGTATCGAGAAACAg > 2:2411157‑M2/62‑76 (MQ=255) tggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGt > 1:4794360‑M2/61‑76 (MQ=255) ggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTa < 1:3581665‑M2/17‑1 (MQ=255) gcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTag > 2:5690137‑M2/59‑76 (MQ=255) cagcgcgaggttggcttctaatacccggcgcccgagacccgcacgcgtcgccctgcaGGTATGGAGAAACAGTaga < 1:926805‑M2/19‑1 (MQ=255) cagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTaga < 2:2273699‑M2/19‑1 (MQ=255) cagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTaga > 1:2954501‑M2/58‑76 (MQ=255) agcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTagag < 2:2980262‑M2/20‑1 (MQ=255) gcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTagaga < 2:4435732‑M2/21‑1 (MQ=255) gcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTagaga > 2:3278442‑M2/56‑76 (MQ=255) cgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTagagag > 1:2012565‑M2/55‑76 (MQ=255) gccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGt > 1:1967413‑M2/54‑76 (MQ=255) gccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGt > 2:2805343‑M2/54‑76 (MQ=255) gccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGt > 1:5060271‑M2/54‑76 (MQ=255) ccgggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGtt < 2:1226786‑M2/24‑1 (MQ=255) ccgggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGtt < 2:3854488‑M2/24‑1 (MQ=255) ccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGtt < 1:3051444‑M2/24‑1 (MQ=255) ccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGtt < 1:2460719‑M2/24‑1 (MQ=255) ccaggttggcttcgaatgcgcggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGtt < 1:5707236‑M2/24‑1 (MQ=255) ggttggcttctaatccccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCg < 2:3446038‑M2/27‑1 (MQ=255) ggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCg > 1:1666712‑M2/50‑76 (MQ=255) tggcttctaatacccggcgcccgagacccgcacgcgtcgccctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATa > 2:2119226‑M2/47‑76 (MQ=255) tggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATa < 1:5196476‑M2/30‑1 (MQ=255) cttctaataccctgcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATaaaa < 2:2088710‑M2/33‑1 (MQ=255) ttctaatacccggcgcccgaggcccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa < 1:3796220‑M2/34‑1 (MQ=255) ttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGACACAGCAGAGAGTGGCTATaaaaa > 2:5736461‑M2/43‑76 (MQ=255) ttctaataccaggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa > 1:5483693‑M2/43‑76 (MQ=255) tctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAg < 1:348320‑M2/35‑1 (MQ=255) tctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAg > 1:1757348‑M2/42‑76 (MQ=255) ctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGTTAAAAAGc < 1:250066‑M2/36‑1 (MQ=255) tacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCa > 1:4730093‑M2/37‑76 (MQ=255) ccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGt < 2:4446069‑M2/43‑1 (MQ=255) ccggcgcccgagacccgcacgcgtcgacctgcaGGCATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCaggg > 2:4729717‑M2/34‑75 (MQ=255) cggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTa < 2:759544‑M2/44‑1 (MQ=255) ggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGGGAGTTGCGATAAAAAGCGTCAGGTAg < 2:4666018‑M2/45‑1 (MQ=255) ggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAg < 2:5071623‑M2/45‑1 (MQ=255) cgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGggagga > 1:1954459‑M2/30‑76 (MQ=255) gcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGAt > 1:2508880‑M2/29‑76 (MQ=255) gccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATc < 2:3291171‑M2/49‑1 (MQ=255) cccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATc > 1:3177710‑M2/28‑76 (MQ=255) ccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACCGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 1:910164‑M2/50‑1 (MQ=255) ccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc < 2:5506192‑M2/50‑1 (MQ=255) cgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCg > 1:819737‑M2/26‑76 (MQ=255) cgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCg > 1:2367367‑M2/26‑76 (MQ=255) gagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGc > 2:1370755‑M2/25‑76 (MQ=255) gagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGc < 1:1456063‑M2/52‑1 (MQ=255) gagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGGAGGATCCGc > 2:5207981‑M2/25‑76 (MQ=255) agacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAgg < 2:3680622‑M2/46‑1 (MQ=255) agacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAgg > 1:3680622‑M2/24‑69 (MQ=255) gacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTa > 2:3169949‑M2/23‑76 (MQ=255) gacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTa < 2:5177742‑M2/54‑1 (MQ=255) acccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTaa < 2:1666712‑M2/55‑1 (MQ=255) cccgcacgcgtcgaccttcaGGTAGGGAGAACGAGTAGCGAGTTGCGATAAAAAGCGTCAGGGAGGATCCGCTCAt < 2:148767‑M2/56‑1 (MQ=255) ccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATc < 1:549879‑M2/57‑1 (MQ=255) ccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATc > 2:2417979‑M2/20‑76 (MQ=255) cgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCt < 1:5823461‑M2/58‑1 (MQ=255) gcacgcgtcgacgtgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCtt < 2:5364255‑M2/59‑1 (MQ=255) gcacgcgtcgacctgcaGGGATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCCAACCtt > 2:3010112‑M2/18‑76 (MQ=255) cacgcgtcgacctgcaGGTATGGAGCAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTa > 1:4640681‑M2/17‑76 (MQ=255) cacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTa > 1:4632655‑M2/17‑76 (MQ=255) cacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTa < 2:4794359‑M2/60‑1 (MQ=255) gcgcgtcgaccggcgGGTATGGAGAGACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTAt < 2:2194226‑M2/61‑1 (MQ=255) acgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTAt > 1:2859682‑M2/16‑76 (MQ=255) acgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTAt < 2:1436185‑M2/61‑1 (MQ=255) acgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTAt < 1:1398496‑M2/61‑1 (MQ=255) cgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATg > 1:2832990‑M2/15‑76 (MQ=255) cgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATg > 1:2072730‑M2/15‑76 (MQ=255) gcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATgg > 2:1168393‑M2/14‑76 (MQ=255) cgtcgccctgcaGGTATGGAGCAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGAGGGATCCGCTAATCTTATGGa > 2:1409240‑M2/13‑76 (MQ=255) cgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGa < 1:1043768‑M2/64‑1 (MQ=255) cgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGAAGGATCCGCTAATCTTATGGa > 2:1424029‑M2/13‑76 (MQ=255) gtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATgg < 2:2022076‑M2/63‑1 (MQ=255) gtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGAt > 2:1625746‑M2/12‑76 (MQ=255) gtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGAt > 2:1977073‑M2/12‑76 (MQ=255) tcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATa > 1:2352672‑M2/11‑76 (MQ=255) tcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATa < 2:2474672‑M2/66‑1 (MQ=255) cgaccttcaGGTACGGAGAAACAGTAGAGAGTGGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATaa < 2:1192917‑M2/67‑1 (MQ=255) cgacctgcaGGTATGGAGAAACAGTAGATAGTTGCGATAAAACGCGTCATGTAGGATCCGCTAATCTTATGGATaa < 1:3290105‑M2/67‑1 (MQ=255) gacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATaaa > 1:4426727‑M2/9‑76 (MQ=255) acctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATaaaa < 1:5205472‑M2/69‑1 (MQ=255) acctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATaaaa > 1:3434425‑M2/8‑76 (MQ=255) acctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATaaaa > 2:578208‑M2/8‑76 (MQ=255) ctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAAt > 2:1464204‑M2/6‑76 (MQ=255) ctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAAt < 2:1948632‑M2/71‑1 (MQ=255) ctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAAt < 1:3577167‑M2/71‑1 (MQ=255) gcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGc > 2:5001398‑M2/4‑76 (MQ=255) caGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGCt < 2:878012‑M2/74‑1 (MQ=255) caGGTATAGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTCATCTTATGGATAAAAAGGCt < 1:3887820‑M2/74‑1 (MQ=255) cggTATGGCGAGACAGCAGCGAGTTGGGAGAAAACGCGTCCGGTAGGCTCGCCTAGTCTTATGGATAAAAATGCTa < 2:5834770/75‑1 (MQ=255) ggTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGCTAt > 1:1065122/1‑76 (MQ=255) | CAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGCTAT > NC_000913/69998‑70148 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |