BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	66,533	3540 bp→CCCGAGACCCGCACGCGTCGACCTGCA		[araD]–araB	[araD], araA, araB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	66533	70072	3540	130 [0]	[0] 157	[araD]–araB	[araD],araA,araB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 66532	0 (0.000)	83 (0.820) +CCCGAGACCCGCACGCGTCGACCTGCA	49/96	0.6	100%	coding (19/696 nt)	araD	L‑ribulose‑5‑phosphate 4‑epimerase
*	?	NC_000913	70073 =	0 (0.000)	83 (0.820) +CCCGAGACCCGCACGCGTCGACCTGCA	49/96	0.6	100%	intergenic (‑25/‑314)	araB/araC	L‑ribulokinase/transcriptional regulator for ara operon

Only 100 of 157 total aligned reads displayed.

CAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGCTAT  >  NC_000913/69998‑70148

gacgaggttgtgttttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcag                                                                             <  2:640387‑M2/1‑1 (MQ=255)

gaccaggttgtgttttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgccctgcag                                                                             >  2:4480716‑M2/76‑76 (MQ=255)

  ccaggttgtgttttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGt                                                                           <  1:3510774‑M2/3‑1 (MQ=255)

    aggttgtgttttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGGAt                                                                         >  1:4852282‑M2/72‑76 (MQ=255)

       ttgtgttttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGga                                                                      >  2:2545220‑M2/69‑76 (MQ=255)

       ttgtgttttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGga                                                                      <  1:3062186‑M2/8‑1 (MQ=255)

       ttgtgttttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGga                                                                      <  2:3035032‑M2/8‑1 (MQ=255)

       ttgtgttttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGga                                                                      >  2:3606068‑M2/69‑76 (MQ=255)

             tggggcggcgccaggttgggttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACa                                                                <  2:1600504‑M2/14‑1 (MQ=255)

              ttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgccGGTATGGAGAAACAg                                                               >  2:2432892‑M2/62‑76 (MQ=255)

              ttggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacccgccGGTATCGAGAAACAg                                                               >  2:2411157‑M2/62‑76 (MQ=255)

               tggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGt                                                              >  1:4794360‑M2/61‑76 (MQ=255)

                ggcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTa                                                             <  1:3581665‑M2/17‑1 (MQ=255)

                 gcagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTag                                                            >  2:5690137‑M2/59‑76 (MQ=255)

                  cagcgcgaggttggcttctaatacccggcgcccgagacccgcacgcgtcgccctgcaGGTATGGAGAAACAGTaga                                                           <  1:926805‑M2/19‑1 (MQ=255)

                  cagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTaga                                                           <  2:2273699‑M2/19‑1 (MQ=255)

                  cagcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTaga                                                           >  1:2954501‑M2/58‑76 (MQ=255)

                   agcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTagag                                                          <  2:2980262‑M2/20‑1 (MQ=255)

                    gcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTagaga                                                         <  2:4435732‑M2/21‑1 (MQ=255)

                    gcgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTagaga                                                         >  2:3278442‑M2/56‑76 (MQ=255)

                     cgccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTagagag                                                        >  1:2012565‑M2/55‑76 (MQ=255)

                      gccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGt                                                       >  1:1967413‑M2/54‑76 (MQ=255)

                      gccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGt                                                       >  2:2805343‑M2/54‑76 (MQ=255)

                      gccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGt                                                       >  1:5060271‑M2/54‑76 (MQ=255)

                       ccgggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGtt                                                      <  2:1226786‑M2/24‑1 (MQ=255)

                       ccgggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGtt                                                      <  2:3854488‑M2/24‑1 (MQ=255)

                       ccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGtt                                                      <  1:3051444‑M2/24‑1 (MQ=255)

                       ccaggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGtt                                                      <  1:2460719‑M2/24‑1 (MQ=255)

                       ccaggttggcttcgaatgcgcggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGtt                                                      <  1:5707236‑M2/24‑1 (MQ=255)

                          ggttggcttctaatccccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCg                                                   <  2:3446038‑M2/27‑1 (MQ=255)

                          ggttggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCg                                                   >  1:1666712‑M2/50‑76 (MQ=255)

                             tggcttctaatacccggcgcccgagacccgcacgcgtcgccctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATa                                                >  2:2119226‑M2/47‑76 (MQ=255)

                             tggcttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATa                                                <  1:5196476‑M2/30‑1 (MQ=255)

                                cttctaataccctgcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATaaaa                                             <  2:2088710‑M2/33‑1 (MQ=255)

                                 ttctaatacccggcgcccgaggcccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa                                            <  1:3796220‑M2/34‑1 (MQ=255)

                                 ttctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGACACAGCAGAGAGTGGCTATaaaaa                                            >  2:5736461‑M2/43‑76 (MQ=255)

                                 ttctaataccaggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATaaaaa                                            >  1:5483693‑M2/43‑76 (MQ=255)

                                  tctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAg                                           <  1:348320‑M2/35‑1 (MQ=255)

                                  tctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAg                                           >  1:1757348‑M2/42‑76 (MQ=255)

                                   ctaatacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGTTAAAAAGc                                          <  1:250066‑M2/36‑1 (MQ=255)

                                       tacccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCa                                      >  1:4730093‑M2/37‑76 (MQ=255)

                                          ccggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGt                                   <  2:4446069‑M2/43‑1 (MQ=255)

                                          ccggcgcccgagacccgcacgcgtcgacctgcaGGCATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCaggg                                   >  2:4729717‑M2/34‑75 (MQ=255)

                                           cggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTa                                  <  2:759544‑M2/44‑1 (MQ=255)

                                            ggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGGGAGTTGCGATAAAAAGCGTCAGGTAg                                 <  2:4666018‑M2/45‑1 (MQ=255)

                                            ggcgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAg                                 <  2:5071623‑M2/45‑1 (MQ=255)

                                              cgcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGggagga                               >  1:1954459‑M2/30‑76 (MQ=255)

                                               gcccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGAt                              >  1:2508880‑M2/29‑76 (MQ=255)

                                                gccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATc                             <  2:3291171‑M2/49‑1 (MQ=255)

                                                cccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATc                             >  1:3177710‑M2/28‑76 (MQ=255)

                                                 ccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACCGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc                            <  1:910164‑M2/50‑1 (MQ=255)

                                                 ccgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATcc                            <  2:5506192‑M2/50‑1 (MQ=255)

                                                  cgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCg                           >  1:819737‑M2/26‑76 (MQ=255)

                                                  cgagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCg                           >  1:2367367‑M2/26‑76 (MQ=255)

                                                   gagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGc                          >  2:1370755‑M2/25‑76 (MQ=255)

                                                   gagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGc                          <  1:1456063‑M2/52‑1 (MQ=255)

                                                   gagacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGGAGGATCCGc                          >  2:5207981‑M2/25‑76 (MQ=255)

                                                    agacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAgg                                <  2:3680622‑M2/46‑1 (MQ=255)

                                                    agacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAgg                                >  1:3680622‑M2/24‑69 (MQ=255)

                                                     gacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTa                        >  2:3169949‑M2/23‑76 (MQ=255)

                                                     gacccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTa                        <  2:5177742‑M2/54‑1 (MQ=255)

                                                      acccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTaa                       <  2:1666712‑M2/55‑1 (MQ=255)

                                                       cccgcacgcgtcgaccttcaGGTAGGGAGAACGAGTAGCGAGTTGCGATAAAAAGCGTCAGGGAGGATCCGCTCAt                      <  2:148767‑M2/56‑1 (MQ=255)

                                                        ccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATc                     <  1:549879‑M2/57‑1 (MQ=255)

                                                        ccgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATc                     >  2:2417979‑M2/20‑76 (MQ=255)

                                                         cgcacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCt                    <  1:5823461‑M2/58‑1 (MQ=255)

                                                          gcacgcgtcgacgtgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCtt                   <  2:5364255‑M2/59‑1 (MQ=255)

                                                          gcacgcgtcgacctgcaGGGATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCCAACCtt                   >  2:3010112‑M2/18‑76 (MQ=255)

                                                           cacgcgtcgacctgcaGGTATGGAGCAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTa                  >  1:4640681‑M2/17‑76 (MQ=255)

                                                           cacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTa                  >  1:4632655‑M2/17‑76 (MQ=255)

                                                           cacgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTa                  <  2:4794359‑M2/60‑1 (MQ=255)

                                                            gcgcgtcgaccggcgGGTATGGAGAGACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTAt                 <  2:2194226‑M2/61‑1 (MQ=255)

                                                            acgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTAt                 >  1:2859682‑M2/16‑76 (MQ=255)

                                                            acgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTAt                 <  2:1436185‑M2/61‑1 (MQ=255)

                                                            acgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTAt                 <  1:1398496‑M2/61‑1 (MQ=255)

                                                             cgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATg                >  1:2832990‑M2/15‑76 (MQ=255)

                                                             cgcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATg                >  1:2072730‑M2/15‑76 (MQ=255)

                                                              gcgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATgg               >  2:1168393‑M2/14‑76 (MQ=255)

                                                               cgtcgccctgcaGGTATGGAGCAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGAGGGATCCGCTAATCTTATGGa              >  2:1409240‑M2/13‑76 (MQ=255)

                                                               cgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGa              <  1:1043768‑M2/64‑1 (MQ=255)

                                                               cgtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGAAGGATCCGCTAATCTTATGGa              >  2:1424029‑M2/13‑76 (MQ=255)

                                                                gtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATgg               <  2:2022076‑M2/63‑1 (MQ=255)

                                                                gtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGAt             >  2:1625746‑M2/12‑76 (MQ=255)

                                                                gtcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGAt             >  2:1977073‑M2/12‑76 (MQ=255)

                                                                 tcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATa            >  1:2352672‑M2/11‑76 (MQ=255)

                                                                 tcgacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATa            <  2:2474672‑M2/66‑1 (MQ=255)

                                                                  cgaccttcaGGTACGGAGAAACAGTAGAGAGTGGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATaa           <  2:1192917‑M2/67‑1 (MQ=255)

                                                                  cgacctgcaGGTATGGAGAAACAGTAGATAGTTGCGATAAAACGCGTCATGTAGGATCCGCTAATCTTATGGATaa           <  1:3290105‑M2/67‑1 (MQ=255)

                                                                   gacctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATaaa          >  1:4426727‑M2/9‑76 (MQ=255)

                                                                    acctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATaaaa         <  1:5205472‑M2/69‑1 (MQ=255)

                                                                    acctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATaaaa         >  1:3434425‑M2/8‑76 (MQ=255)

                                                                    acctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATaaaa         >  2:578208‑M2/8‑76 (MQ=255)

                                                                      ctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAAt       >  2:1464204‑M2/6‑76 (MQ=255)

                                                                      ctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAAt       <  2:1948632‑M2/71‑1 (MQ=255)

                                                                      ctgcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAAt       <  1:3577167‑M2/71‑1 (MQ=255)

                                                                        gcaGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGc     >  2:5001398‑M2/4‑76 (MQ=255)

                                                                         caGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGCt    <  2:878012‑M2/74‑1 (MQ=255)

                                                                         caGGTATAGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTCATCTTATGGATAAAAAGGCt    <  1:3887820‑M2/74‑1 (MQ=255)

                                                                          cggTATGGCGAGACAGCAGCGAGTTGGGAGAAAACGCGTCCGGTAGGCTCGCCTAGTCTTATGGATAAAAATGCTa   <  2:5834770/75‑1 (MQ=255)

                                                                           ggTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGCTAt  >  1:1065122/1‑76 (MQ=255)

CAAAGCTCGCACAGAATCACTGCCAAAATCGAGGCCAATTGCAATCGCCATCGTTTCACTCCATCCAAAAAAACGGGTATGGAGAAACAGTAGAGAGTTGCGATAAAAAGCGTCAGGTAGGATCCGCTAATCTTATGGATAAAAATGCTAT  >  NC_000913/69998‑70148

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`