| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 279335 | NA (NA) | 135 (0.850) | 78/150 | 0.6 | 30.0% | coding (252/339 nt) | b4505 | hypothetical protein |
| ? | NC_000913 | 370982 = | 315 (1.980) | coding (535/882 nt) | mhpC | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase | |||||
Only 100 of 582 total aligned reads displayed.
CCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGC > NC_000913/370907‑371057 | cgagaaagacactgaagttcaaaacaccgaaagcgatacatgaaagtggtgttgcattgacagattgaatctacaa < 1:1877672‑M2/1‑1 (MQ=255)ccGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCtgatga < 1:2650169/76‑1 (MQ=255) cGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTgatgat < 1:3452544/76‑1 (MQ=255) tGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGa > 2:4237873/1‑76 (MQ=255) cAACCGAAGGTATTAAGCGACTGAATCAGATTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGACGGTtgtaga < 2:5580870‑M2/76‑7 (MQ=255) agccGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATc < 2:1472686/74‑1 (MQ=255) actgaagttcaaaacaccgaaagagataattgaaaggggcgttgcattgacagattgaatctacaATGGATCTCtt > 2:933054‑M2/66‑76 (MQ=255) ctgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTc > 1:3185387‑M2/65‑76 (MQ=255) cGAAGGGATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTc > 2:2448058/1‑76 (MQ=255) gAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCg > 2:5294834/1‑76 (MQ=255) aaGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaat > 2:5453716‑M2/1‑64 (MQ=255) ggTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGttt < 2:4675061/76‑1 (MQ=255) ggTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGttt < 1:2802152/76‑1 (MQ=255) gTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGtttt > 1:5304234/1‑76 (MQ=255) tATTAAGCGGCTGAATCAGCTGTATCGTGAGCCGACTATCGAAAACCTGAAGCTGATGATtatagattcaattggt > 2:2061882‑M2/1‑60 (MQ=255) tcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTg < 2:1997935‑M2/19‑1 (MQ=255) aTTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTg > 2:2726496/1‑76 (MQ=255) tAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaa > 2:3314575‑M2/1‑57 (MQ=255) aaGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATa > 2:1531381/1‑76 (MQ=255) aacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATAc < 1:1132520‑M2/23‑1 (MQ=255) aGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATAc < 1:5453260/76‑1 (MQ=255) aGCGACTGAATCAGCTTTATCGACAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATAc > 1:3800985/1‑76 (MQ=255) gcgcCTGAATCAGCTTTCACGTCAGCCGACTATCGAAAACCTTAAGCTGATGATGGATATCTTCGTTTTTGATAcc < 1:832673/76‑1 (MQ=255) gCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATAcc > 1:891347/1‑76 (MQ=255) ggACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCa < 2:5372105/75‑1 (MQ=255) cGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCa < 2:3804244/76‑1 (MQ=255) gACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaa < 2:4855793‑M2/76‑25 (MQ=255) gACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAg < 1:1416975/76‑1 (MQ=255) accgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAg < 2:3873711‑M2/26‑1 (MQ=255) ccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGc > 1:3132727‑M2/50‑76 (MQ=255) ccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGc < 2:1748493‑M2/27‑1 (MQ=255) aCTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGc > 2:4013275/1‑76 (MQ=255) aCTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGc < 2:729492/76‑1 (MQ=255) cTGAATCGGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaaca > 1:759667‑M2/1‑50 (MQ=255) tGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacag < 1:4911935‑M2/76‑28 (MQ=255) tGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGa > 1:3004748/1‑76 (MQ=255) tGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGa < 2:1677403/76‑1 (MQ=255) gaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACccgcgt > 2:308247‑M2/48‑75 (MQ=255) gAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGAt > 1:4008308/1‑76 (MQ=255) aTCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGAttt > 1:1511577/1‑76 (MQ=255) aTCAGCATTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagtta > 1:5022861‑M2/1‑46 (MQ=255) tCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTg < 2:1869745/76‑1 (MQ=255) cAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatg > 2:3462387‑M2/1‑44 (MQ=255) agataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGa > 2:5766703‑M2/43‑76 (MQ=255) gataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGAc > 1:4699721‑M2/42‑76 (MQ=255) aGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGAc < 2:2890847/76‑1 (MQ=255) gCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGAcc < 2:4598418/76‑1 (MQ=255) gCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGAcc > 1:4602126/1‑76 (MQ=255) cTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtga > 1:1993473‑M2/1‑41 (MQ=255) ttATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaa > 1:688024‑M2/1‑39 (MQ=255) ttATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGAc < 2:1057549/76‑1 (MQ=255) ttATCGTCAGCCCACCATCGAAAACCTGAAGCTGATGATGGATATCTGCGTTTGCTCTACCCGCGACTTGACCGAc > 2:1638154/1‑76 (MQ=255) tCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGcc < 2:3356797/76‑1 (MQ=255) gTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatg > 1:4287477‑M2/1‑34 (MQ=255) tCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatgg < 1:2723999‑M2/76‑44 (MQ=255) gggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGtt > 1:1022002‑M2/30‑76 (MQ=255) aGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGtt > 1:2579022/1‑76 (MQ=255) aGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGtt > 1:3621601/1‑76 (MQ=255) gCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggt > 1:4490340‑M2/1‑30 (MQ=255) tgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGa < 1:1331881‑M2/50‑1 (MQ=255) ggttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGa < 2:4800814‑M2/50‑1 (MQ=255) gttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGaa < 2:5484851‑M2/51‑1 (MQ=255) gACTAGCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGaa < 2:5613812/76‑1 (MQ=255) acgaTCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTTACCGACGCCCTGTTTGAAg < 1:5563338/73‑1 (MQ=255) cTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAgc < 1:4179730/76‑1 (MQ=255) gcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCTCGGTTTGAAgcg > 1:5699715‑M2/23‑76 (MQ=255) cattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAgcgc > 2:1173430‑M2/22‑76 (MQ=255) aTCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggag < 2:3644136‑M2/76‑54 (MQ=255) aTCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAgcgc < 2:2321279/76‑1 (MQ=255) tCGAGAGCCTGAAGCGGAGTTTGGATCTCTTCGTTTTTGATGCCAGCGATTTGGCCGACGCGCTGTTTGAAtcgct < 1:5795326/76‑2 (MQ=255) tCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAgcgcg < 2:4984173/76‑1 (MQ=255) attgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAgcgcg > 1:1571216‑M2/21‑76 (MQ=255) cGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAgcgcgc < 1:1623316/76‑1 (MQ=255) tgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGCCGCCCTGTTTGAAGCGCGcc > 2:4483233‑M2/19‑76 (MQ=255) gAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggtt > 1:1694193‑M2/1‑20 (MQ=255) gAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGcc < 1:194310/76‑1 (MQ=255) aaaaCCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCt < 2:3292644/76‑1 (MQ=255) gattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGaat < 2:2152632‑M2/63‑1 (MQ=255) gattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGaat < 1:2058144‑M2/63‑1 (MQ=255) ccTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGaat < 1:4787267/76‑1 (MQ=255) cTGAAGCTGATGATGGATATCGTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGGTTGAAGCGCGCCTGaata > 2:3226163/1‑76 (MQ=255) tgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGaataat > 1:2416288‑M2/11‑76 (MQ=255) gaatctacaTTGGCTATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGActaata < 2:4181586‑M2/67‑1 (MQ=255) aaGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAataata > 1:1199062/1‑76 (MQ=255) aaGCGGATGTTGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTGTGAAGCGCGCCTGAataata > 2:3185055/1‑76 (MQ=255) aatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAatat < 1:5196206‑M2/68‑1 (MQ=255) gCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATg > 2:5194156/1‑76 (MQ=255) tctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGc < 1:653011‑M2/70‑1 (MQ=255) tctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGc < 1:4067721‑M2/70‑1 (MQ=255) tgatgaTtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagac < 2:5062671‑M2/76‑70 (MQ=255) tgatgaTtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagac > 1:3889848‑M2/1‑7 (MQ=255) tgatgaTtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagac > 2:3739131‑M2/1‑7 (MQ=255) ctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCt < 2:2568374‑M2/71‑1 (MQ=255) ctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCt < 1:3282251‑M2/71‑1 (MQ=255) atgattgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgagacga < 2:1327679‑M2/76‑72 (MQ=255) atgatgGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGt > 2:4093395/1‑76 (MQ=255) tgatgGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTc > 2:2640755/1‑76 (MQ=255) tgatgGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTc > 1:2226208/1‑76 (MQ=255) gatgGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTcg > 1:249124/1‑76 (MQ=255) atgGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTcgc < 1:3716058/76‑1 (MQ=255) | CCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGC > NC_000913/370907‑371057 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |