Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,474,849	20 bp→GTATTTCCCGGCATCTTTATAGCGATAGCA	intergenic (+24/+2)	yjgL → / ← argI	hypothetical protein/ornithine carbamoyltransferase 1

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4474849	4474868	20	99 [0]	[0] 100	yjgL/argI	hypothetical protein/ornithine carbamoyltransferase 1

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4474848	0 (0.000)	60 (0.630) +GTATTTCCCGGCATCTTTATAGCGATAGCA	41/90	1.0	100%	intergenic (+23/+22)	yjgL/argI	hypothetical protein/ornithine carbamoyltransferase 1
	?	NC_000913	4474869 =	0 (0.000)					intergenic (+44/+1)	yjgL/argI	hypothetical protein/ornithine carbamoyltransferase 1

ACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAA‑TAATGTGATGCCGGGATGGTTTCCGCATCTTATAGCGATCAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTC  >  NC_000913/4474774‑4474923                                                                             |                                                                            aCGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGttt                                                                             <  2:5074466/76‑1 (MQ=255)  cGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTg                                                                            <  2:2037453‑M1/76‑2 (MQ=255)   gTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgt                                                                           >  1:2500866‑M1/1‑74 (MQ=255)   gTATAGCAATAGAACACTTTGGGCGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgt                                                                           >  2:1999166‑M1/1‑74 (MQ=255)    tataGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgta                                                                          <  1:2697826‑M1/76‑4 (MQ=255)     ataGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtat                                                                         <  2:3449116‑M1/76‑5 (MQ=255)     ataGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtat                                                                         >  1:5286088‑M1/1‑72 (MQ=255)      taGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatt                                                                        <  1:1685334‑M1/76‑6 (MQ=255)        gCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttc                                                                      <  1:5047611‑M1/76‑8 (MQ=255)        gCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttc                                                                      <  2:5286087‑M1/76‑8 (MQ=255)         cAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcc                                                                     >  2:5170908‑M1/1‑68 (MQ=255)         cAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcc                                                                     >  2:1065605‑M1/1‑68 (MQ=255)          aaTAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttccc                                                                    <  2:716706‑M1/76‑10 (MQ=255)          aaTAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttccc                                                                    <  1:482835‑M1/76‑10 (MQ=255)          aaTAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttccc                                                                    >  1:4083442‑M1/1‑67 (MQ=255)           aTAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccg                                                                   >  1:1273664‑M1/1‑66 (MQ=255)           aTAGAACACTTTGGGCGGAACAATAGAACTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccg                                                                   >  2:4153916‑M1/1‑66 (MQ=255)            tAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccgg                                                                  >  1:2825938‑M1/1‑65 (MQ=255)            tAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccgg                                                                  <  1:290063‑M1/76‑12 (MQ=255)             aGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggc                                                                 <  2:2197713‑M1/76‑13 (MQ=255)             aGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggc                                                                 <  1:4083800‑M1/76‑13 (MQ=255)             aGAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggc                                                                 >  2:5688683‑M1/1‑64 (MQ=255)              gAACACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggca                                                                >  2:4142820‑M1/1‑63 (MQ=255)               aaCACTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcat                                                               <  2:520571‑M1/76‑15 (MQ=255)                  acTTTGGGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctt                                                            >  1:5471607‑M1/1‑59 (MQ=255)                    tttGTGTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatcttta                                                          <  2:2236662‑M1/76‑20 (MQ=255)                        ggTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc                                                      >  1:415387‑M1/1‑53 (MQ=255)                        ggTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc                                                      <  1:1307822‑M1/76‑24 (MQ=255)                        ggTGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagc                                                      <  1:4543673‑M1/76‑24 (MQ=255)                          tGGAAGAATAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcga                                                    >  1:1696397‑M1/1‑51 (MQ=255)                           gtaagaataGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgat                                                   <  1:2861330‑M1/74‑27 (MQ=255)                            gaagaaTAGACCTATCGCTGCAT‑AAAGTAATGTGATGCCGGGATGGTTTgtatttcccgtcatctttatagcgata                                                  <  2:1296643‑M1/76‑28 (MQ=255)                            gaagaaTAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgata                                                  <  1:3289137‑M1/76‑28 (MQ=255)                            gaagaaTAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgata                                                  <  1:510791‑M1/76‑28 (MQ=255)                              agaaTAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagc                                                >  2:3669994‑M1/1‑47 (MQ=255)                               gaaTAGACCTATCACTGCATAAAA‑TAATGTGGTGAAGGGGTGGTTTgtatttcacggcatctttatagcgatagca                                               >  2:3446866‑M1/1‑46 (MQ=255)                               gaaTAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagca                                               <  1:2055278‑M1/76‑31 (MQ=255)                                aaTAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatccttataccgacagcaa                                              >  2:738863‑M1/1‑45 (MQ=255)                                 aTAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat                                             >  1:1685020‑M1/1‑44 (MQ=255)                                 aTAGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaat                                             >  1:1722902‑M1/1‑44 (MQ=255)                                   aGACCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaatta                                           >  2:2719944‑M1/1‑42 (MQ=255)                                     aCCTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatt                                         >  1:1971189‑M1/1‑40 (MQ=255)                                      ccTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattattt                                        >  2:2879384‑M1/1‑39 (MQ=255)                                       cTATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattattta                                       >  2:417158‑M1/1‑38 (MQ=255)                                        tATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttac                                      >  1:5258114‑M1/1‑37 (MQ=255)                                        tATCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttac                                      >  2:5667976‑M1/1‑37 (MQ=255)                                         aTCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttact                                     <  1:2693641‑M1/76‑41 (MQ=255)                                         aTCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatt                                                                        <  2:663716‑M1/41‑6 (MQ=255)                                         aTCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatt                                                                        >  1:663716‑M1/1‑36 (MQ=255)                                          tCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactg                                    >  2:3497901‑M1/1‑35 (MQ=255)                                          tCACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagagatagcaattctttactg                                    >  2:3540028‑M1/1‑35 (MQ=255)                                           cACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactga                                   <  1:382259‑M1/76‑43 (MQ=255)                                           cACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactga                                   >  1:1116388‑M1/1‑34 (MQ=255)                                           cACTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactga                                   >  1:4512257‑M1/1‑34 (MQ=255)                                           cACTGCATAAAA‑TAATGGGATGCCGGGAGGGTTTgtattgcccggcatctttatagcgatagcaattatttactga                                   <  2:200589‑M1/76‑43 (MQ=255)                                            aCTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgag                                  <  1:4279716‑M1/76‑44 (MQ=255)                                            aCTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgag                                  <  2:415387‑M1/76‑44 (MQ=255)                                            aCTGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgag                                  >  2:4259931‑M1/1‑33 (MQ=255)                                              tGCATAAAA‑TAATGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcg                                <  2:3442830‑M1/76‑46 (MQ=255)                                              tGCATAAAA‑TAATGGGATGCCGGGATGGTTTgtattgcccggcatctttatagcgatagcaattatttactgagcg                                <  2:3483138‑M1/76‑46 (MQ=255)                                                 ataaaa‑taatgtGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcg                             <  2:4091036‑M1/73‑49 (MQ=255)                                                    aaa‑taaTGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcga                          <  1:1221429‑M1/76‑52 (MQ=255)                                                     aa‑taatGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgac                         >  2:3399221‑M1/1‑24 (MQ=255)                                                     aa‑taatGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgac                         <  2:1696397‑M1/76‑53 (MQ=255)                                                     aa‑taatGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgac                         >  1:4610873‑M1/1‑24 (MQ=255)                                                      a‑taatGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgccc                        >  2:3535407‑M1/1‑23 (MQ=255)                                                      a‑taatGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgacc                        <  1:1610003‑M1/76‑54 (MQ=255)                                                      a‑taatGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgacc                        <  1:1147795‑M1/76‑54 (MQ=255)                                                        taatGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgacca                       <  2:1637451‑M1/76‑55 (MQ=255)                                                         aatGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccat                      >  2:4703498‑M1/1‑21 (MQ=255)                                                          atGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatc                     >  2:5111339‑M1/1‑20 (MQ=255)                                                          atGTGATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatc                     <  1:1065605‑M1/76‑57 (MQ=255)                                                           tgtgATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatca                    >  1:1038060‑M1/1‑19 (MQ=255)                                                           tgtgATGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatca                    >  2:5157277‑M1/1‑19 (MQ=255)                                                                tGCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgct               >  2:1472948‑M1/1‑14 (MQ=255)                                                                 gCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctt              >  1:1428479‑M1/1‑13 (MQ=255)                                                                 gCCGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctt              >  2:4842800‑M1/1‑13 (MQ=255)                                                                  gcgGGCTGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgcttt             <  2:422613‑M1/75‑65 (MQ=255)                                                                  ctgggatGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgccgcgaccatcaccgcttt             >  2:4090858‑M1/3‑12 (MQ=255)                                                                  ccGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgcttt             >  2:4437179‑M1/1‑12 (MQ=255)                                                                   cGGGATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttg            >  1:5265414‑M1/1‑11 (MQ=255)                                                                    gggATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttga           >  2:3081542‑M1/1‑10 (MQ=255)                                                                     ggATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttgat          >  1:5685210‑M1/1‑9 (MQ=255)                                                                     ggATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttgat          >  1:5052207‑M1/1‑9 (MQ=255)                                                                     ggATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttgat          >  2:2335693‑M1/1‑9 (MQ=255)                                                                      gATGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttgata         <  1:2879384‑M1/76‑69 (MQ=255)                                                                        tGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttgatagt       >  1:3919096‑M1/1‑6 (MQ=255)                                                                        tGGTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttgatagt       <  1:4375655‑M1/76‑71 (MQ=255)                                                                         ggTTTgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttgatagta      <  1:2057952‑M1/76‑72 (MQ=255)                                                                           tttgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttgatagtatg    <  1:4175126‑M1/76‑74 (MQ=255)                                                                           tttgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttgatagtatg    >  1:5528138‑M1/1‑3 (MQ=255)                                                                            ttgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttgatagtatgc   <  2:3620183‑M1/76‑75 (MQ=255)                                                                            ttgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttgatagtatgc   >  2:4584506‑M1/1‑2 (MQ=255)                                                                            ttgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttgatagtatgc   <  1:3195946‑M1/76‑75 (MQ=255)                                                                             tgtatttcccggcctctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttgatagtatgca  <  2:4436288‑M1/76‑76 (MQ=255)                                                                             tgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttgatagtatgca  >  2:5613446‑M1/1‑1 (MQ=255)                                                                             tgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttgatagtatgca  >  2:3148957‑M1/1‑1 (MQ=255)                                                                             tgtatttcccggcatctttatagcgatagcaattatttactgagcgtcgcgaccatcaccgctttgatagtatgca  <  2:3919095‑M1/76‑76 (MQ=255)                                                                             tgtatttcccggcatctttatagcgatagcaattatttactgagcgacgcgaccataaccgctttgatagtatgca  >  2:2352945‑M1/1‑1 (MQ=255)                                                                             |                                                                            ACGTATAGCAATAGAACACTTTGGGTGGAAGAATAGACCTATCACTGCAT‑AAA‑TAATGTGATGCCGGGATGGTTTCCGCATCTTATAGCGATCAGATTATTTACTGAGCGTCGCGACCATCACCGCTTTGATAGTATGCATACGGTTTTC  >  NC_000913/4474774‑4474923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑