| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 244129 = | 131 (0.960) | 174 (1.470) +ACTTCGCCCA |
50/130 | 1.1 | 60.6% | intergenic (+8/‑198) | gmhA/yafJ | phosphoheptose isomerase/putative amidotransferase |
| ? | NC_000913 | 757626 = | 131 (0.960) | coding (715/717 nt) | sdhB | succinate dehydrogenase iron sulfur protein | |||||
Only 100 of 244 total aligned reads displayed.
ATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGCCT‑‑AC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/244203‑244129‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAACCGTAGGCCTGATAAGACGCGCAAGC > NC_000913/757626‑757655 |||||||||| ATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACA > 2:574274/1‑76ATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACA > 2:3927252/1‑76 TAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACAC > 1:3084891/1‑76 AAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTCAACGTCTTATCCGGTCT‑‑AAACT > 2:1506036/1‑76 AAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAACCGTCTTATCCGGTCT‑‑CCACT > 2:523817/1‑76 AAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACT > 1:544551/1‑76 AGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTT > 1:1238413/1‑76 AGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTT > 2:4034571/1‑76 AGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTT > 1:892318/1‑76 GACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTC < 1:3541516/76‑1 GACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTC < 1:4534968/76‑1 GACGCGGCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTC < 2:4182306/76‑1 ACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCG > 2:2323749/1‑76 CGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGC > 1:92968/1‑76 CGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGC < 2:2933218/76‑1 GCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCC < 1:491294/76‑1 GCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCC > 1:1515932/1‑76 GCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCC < 1:3256286/76‑1 CGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCC < 2:2520524/76‑1 GTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCA > 1:880205/1‑76 GTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCA < 1:1862510/76‑1 gCAGCGGCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCAT < 2:781684/75‑1 TCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCAT > 1:808957/1‑76 TCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCAT < 2:4377434/76‑1 CAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATA > 2:1190384/1‑76 CAGCGTCGCATCAGGCATAAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATA > 2:1562969/1‑76 AGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAA > 1:3174089/1‑76 GCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAA > 1:1666981/1‑76 GCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAA < 2:3836971/76‑1 CGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAgc > 2:2121041/1‑74 GTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAACCC > 1:1129602/1‑76 GTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACC < 2:4272736/76‑1 GTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACC < 2:1450669/76‑1 GTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACC > 2:1232198/1‑76 gCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCG < 1:239761/75‑1 TCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCG > 2:3268919/1‑76 TCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCG > 1:177545/1‑76 CGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGT > 1:4126709/1‑76 CGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGT < 2:3251026/76‑1 CGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGT > 2:2389130/1‑76 CGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGT < 2:2253060/76‑1 CGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGT > 2:1043190/1‑76 GCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTA > 1:3888985/1‑76 GCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTA > 2:2713434/1‑76 GCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTA < 1:4605558/76‑1 CATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAG > 2:2808035/1‑76 ATCAGGCGTCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGG < 2:2047122/76‑1 ATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGG < 2:3412461/76‑1 ATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGG > 1:2435099/1‑76 ATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGG > 1:594401/1‑76 TCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCTACACACTTCGCCCATAAACCGTAG > 1:2835085/1‑76 TCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGC < 2:349396/76‑1 TCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGC > 1:1338999/1‑76 CAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCC > 1:2163963/1‑76 CAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCC < 1:1102352/76‑1 AGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCT > 1:3123749/1‑76 AGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGCAGGCCT > 2:1891913/1‑76 CATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGAT < 2:3748887/76‑1 CATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGAT > 1:2510336/1‑76 ATCAGCGCCCAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGcga > 1:4445633/1‑73 ATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATA > 1:3996672/1‑76 ATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATA < 1:4310030/76‑1 ATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATA > 2:707997/1‑76 ATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATA < 1:2933921/76‑1 TCAGCGCACAAATGCCGGATGCGTCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCCTAGGGCTGTTAA < 1:3331543/76‑1 TCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAA > 1:471611/1‑76 CAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAG < 1:83506/76‑1 CAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAG > 1:4619168/1‑76 CAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAG > 2:1699053/1‑76 AGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGA < 1:4209959/76‑1 AGCGAACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGA > 1:3751652/1‑76 GCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGAC > 1:2277660/1‑76 GCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGAC > 2:3144803/1‑76 CGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACG > 2:1921600/1‑76 CGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACG < 2:1860993/76‑1 CGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACG < 1:3341180/76‑1 CGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACG < 2:1106608/76‑1 CGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACG < 2:2988833/76‑1 CGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACG > 1:4030063/1‑76 GCACAAATGCCGGATGCGGCGTAACCGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGC < 1:4680280/76‑1 GCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGC > 1:4799541/1‑76 CACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCG > 1:2698202/1‑76 CACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCG < 1:1068052/76‑1 CACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCG > 1:1790306/1‑76 CACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCG < 1:4271423/76‑1 CACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCG > 2:2209992/1‑76 ACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGC < 1:3808143/76‑1 CAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCA > 1:4175944/1‑76 CAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCA < 1:716561/76‑1 CAAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCA < 2:4724875/76‑1 AAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCAt < 1:3657182/76‑2 AAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCAt > 1:2632424/1‑75 AAATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCAt > 1:1948411/1‑75 AATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCAta < 2:3087172/76‑3 AATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCAta > 1:2062148/1‑74 AATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCAta > 1:347058/1‑74 ATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCAtag > 2:4540794/1‑73 ATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCAtag > 1:1899794/1‑73 ATGCCGGATGCGGCGTAAACGTCTTATCCGGTCT‑‑ACACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGCAtac > 2:4110163/1‑73 CACTTCGCCCATAAACCGTAGGCCTGATAAGACGCGC < 1:3595733/37‑1 |||||||||| ATAAGACGCGTCAGCGTCGCATCAGGCATCAGCGCACAAATGCCGGATGCGGCGTAAACGTCTTATCCGGCCT‑‑AC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/244203‑244129‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAACCGTAGGCCTGATAAGACGCGCAAGC > NC_000913/757626‑757655 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |