| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 244129 = | 131 (0.960) | 174 (1.470) +ACTTCGCCCA |
50/130 | 1.1 | 60.6% | intergenic (+8/‑198) | gmhA/yafJ | phosphoheptose isomerase/putative amidotransferase |
| ? | NC_000913 | 757626 = | 131 (0.960) | coding (715/717 nt) | sdhB | succinate dehydrogenase iron sulfur protein | |||||
Only 100 of 305 total aligned reads displayed.
AGTGTATGTCCGAAGGGGCTGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATC > NC_000913/757551‑757700 | tcagcgtcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccat > 1:808957‑M2/76‑76 (MQ=255)tcagcgtcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccat > 1:910703‑M2/76‑76 (MQ=255)tcagcgtcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccat > 2:3426577‑M2/76‑76 (MQ=255)tcagcggcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccat < 2:4491536‑M2/1‑1 (MQ=255) gtgtATGTCCGAAGGGGCTGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTa < 2:2787698/76‑1 (MQ=255) cagcgtcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTa < 2:3443163‑M2/2‑1 (MQ=255) cagcgtcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTa > 2:3792020‑M2/75‑76 (MQ=255) agcgtcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgccccTaa > 2:781602‑M2/74‑76 (MQ=255) agcgtcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTaa > 1:3174089‑M2/74‑76 (MQ=255) agcgtcgcatcaggcatcagcgcacaaatgccggatgcggcgcaaacgccttatccggcctacactccccccatac > 2:298000‑M2/74‑75 (MQ=255) gtgtGTCCGAGGGTGCTGAACCCGACGCGCGCCCTCGGCCATATCAAGTCGATGTTGTTGCAACTTAATGCGTaaa < 2:1068165/73‑1 (MQ=255) gtATGTCCGAAGGGGCTGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTaaa < 1:506455/76‑1 (MQ=255) gcgtcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTaaa < 2:3836971‑M2/4‑1 (MQ=255) tATGTCCGAAGGGGCTGAACCCGACGCGCGCCATCGGCCATATCCAGTCGATGTTGTTGCAACCTAATGCGTAAAc > 2:664811/1‑76 (MQ=255) gtgcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAAc < 1:4826602‑M2/5‑1 (MQ=255) gtcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAAcc < 1:2144868‑M2/6‑1 (MQ=255) gtcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAAcc > 1:4038922‑M2/71‑76 (MQ=255) gtcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAAcc > 1:2871336‑M2/71‑76 (MQ=255) gtcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAAcc > 1:3890794‑M2/71‑76 (MQ=255) gtcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAAcc > 1:352319‑M2/71‑76 (MQ=255) tcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCg > 2:3058002‑M2/70‑76 (MQ=255) tcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCg > 1:177545‑M2/70‑76 (MQ=255) gcgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCg < 1:239761‑M2/7‑1 (MQ=255) cgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGt < 2:3251026‑M2/8‑1 (MQ=255) cgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGt > 2:2389130‑M2/69‑76 (MQ=255) cgcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGt > 1:377549‑M2/69‑76 (MQ=255) tCCGAAGGGGCTGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTa > 1:1196794/1‑76 (MQ=255) gcatcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTa > 2:2260429‑M2/68‑76 (MQ=255) ccGAAGGGGCTGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAg < 2:2521264/76‑1 (MQ=255) cGAAGGGGCTGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAgg < 2:3600952/76‑1 (MQ=255) atcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAgg > 1:594401‑M2/66‑76 (MQ=255) tcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGc > 1:3567166‑M2/65‑76 (MQ=255) tcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGc < 2:1651282‑M2/12‑1 (MQ=255) tcaggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGc > 1:1338999‑M2/65‑76 (MQ=255) gAAGGGGCTGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGc > 1:3692384/1‑76 (MQ=255) caggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatcgggtctacacttcgcccaTAAACCGTAGGcc < 1:1413252‑M2/13‑1 (MQ=255) caggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGcc < 1:1102352‑M2/13‑1 (MQ=255) caggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGcc > 1:4176848‑M2/64‑76 (MQ=255) caggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGcc > 1:3098674‑M2/64‑76 (MQ=255) aggcatcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGCAGGCCt > 2:1891913‑M2/63‑76 (MQ=255) aGGGGCTGACCCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCt < 2:4350018/76‑1 (MQ=255) gggCTGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGa > 2:3166459/1‑76 (MQ=255) catcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGAt > 2:2110609‑M2/60‑76 (MQ=255) catcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGAt < 1:3613952‑M2/17‑1 (MQ=255) atcagcgcccaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGcctgcga > 1:4445633‑M2/59‑73 (MQ=255) atcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATa < 1:4310030‑M2/18‑1 (MQ=255) atcagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATa > 1:1942148‑M2/59‑76 (MQ=255) tcagcgcacaaatgccggatgcgtcgtaaacgtcttatccggtctacacttcgcccaTAAACCCTAGGGCTGTTaa < 1:3331543‑M2/19‑1 (MQ=255) cTGAACCCGACGCGCGCCATCGGCCATATCAAGAAGATGTTGTTTCAACGTAAAGCGGAAAACGCAGGCCTGATaa > 1:4721320/1‑76 (MQ=255) cagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATAAg > 2:1699053‑M2/57‑76 (MQ=255) cagcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATAAg > 1:4619168‑M2/57‑76 (MQ=255) gAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGa > 1:1236083/1‑76 (MQ=255) gcgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATAAGAc < 1:4134774‑M2/22‑1 (MQ=255) cgcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATAAGAcg < 2:1123945‑M2/23‑1 (MQ=255) aCCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGAcg < 1:1740675/76‑1 (MQ=255) gcgcaactgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATAAGAcgc < 2:4128009‑M2/24‑1 (MQ=255) gcacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATAAGAcgc > 1:4581126‑M2/53‑76 (MQ=255) cccGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGAcgc > 1:815045/1‑76 (MQ=255) cccGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGAcgc < 2:4261837/76‑1 (MQ=255) ccGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGAcgcg > 1:1835236/1‑76 (MQ=255) cacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATAAGAcgcg > 1:2698202‑M2/52‑76 (MQ=255) cacaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATAAGAcgcg > 2:2209992‑M2/52‑76 (MQ=255) acaaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATAAGACgcgc < 1:3808143‑M2/26‑1 (MQ=255) gACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCa > 1:200867/1‑76 (MQ=255) caaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATAAGACGCGCa < 2:4724875‑M2/27‑1 (MQ=255) aaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATAAGACGCGcat < 2:1220766‑M2/28‑2 (MQ=255) aaatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATAAGACGCGcat > 1:2531288‑M2/49‑75 (MQ=255) cgcgcgCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAg < 2:2064384/76‑1 (MQ=255) aatgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATAAGACGCgcata < 2:3087172‑M2/29‑3 (MQ=255) atgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATAAGACGcgcatag > 2:4013551‑M2/47‑73 (MQ=255) atgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATAAGACGcgcatag > 2:4540794‑M2/47‑73 (MQ=255) atgccggatgcggcgtaaacgtcttatccggtctacacttcgcccaTAAACCGTAGGCCTGATAAGACGcgcatag > 1:1899794‑M2/47‑73 (MQ=255) gcgcCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGt < 2:586251/76‑1 (MQ=255) cgcCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTc > 1:4714667/1‑76 (MQ=255) cgcCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTc < 1:3637887/76‑1 (MQ=255) cgcCAGCGGCCATATCAAGTCGATGGTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTc < 2:1840496/76‑1 (MQ=255) gcCATCGTCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCg < 1:3976296/76‑1 (MQ=255) cATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCa < 1:25017/76‑1 (MQ=255) aTCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCAt < 1:3469042/76‑1 (MQ=255) tCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATc < 2:3906690/76‑1 (MQ=255) tCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATc > 2:1297497/1‑76 (MQ=255) cGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCa < 1:4219255/76‑1 (MQ=255) ggCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAg > 1:694298/1‑76 (MQ=255) ggCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAg < 2:3282791/76‑1 (MQ=255) gCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCg > 1:1653167/1‑66 (MQ=255) gCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAgg < 1:865379/76‑1 (MQ=255) gCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAgg < 2:3690664/76‑1 (MQ=255) gTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGtac < 1:102174/76‑3 (MQ=255) aTGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGa > 2:2440254/1‑76 (MQ=255) tgttgtTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGAt > 1:2791912/1‑76 (MQ=255) gttgCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCAt < 1:2276718/53‑1 (MQ=255) tgCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATgcggcg > 2:2845886/1‑76 (MQ=255) tgCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATgcggcg > 2:1465275/1‑76 (MQ=255) cAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTg < 2:1369778/76‑1 (MQ=255) aaCGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGa < 2:4853014/76‑1 (MQ=255) tAATGGGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGc < 2:3549215/76‑1 (MQ=255) aaTGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGcc < 2:2011440/76‑1 (MQ=255) gCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCtt > 2:809862/1‑75 (MQ=255) gTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATc < 1:2416653/76‑1 (MQ=255) gTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATc < 1:3347915/76‑1 (MQ=255) | AGTGTATGTCCGAAGGGGCTGAACCCGACGCGCGCCATCGGCCATATCAAGTCGATGTTGTTGCAACGTAATGCGTAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAACCAGTGCCGGATGCGGCGTGAACGCCTTATC > NC_000913/757551‑757700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |