| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 244129 = | 131 (0.960) | 174 (1.470) +ACTTCGCCCA |
50/130 | 1.1 | 60.6% | intergenic (+8/‑198) | gmhA/yafJ | phosphoheptose isomerase/putative amidotransferase |
| ? | NC_000913 | 757626 = | 131 (0.960) | coding (715/717 nt) | sdhB | succinate dehydrogenase iron sulfur protein | |||||
Only 100 of 388 total aligned reads displayed.
AGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATC > NC_000913/244057‑244204 | agaTTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGcc < 2:1556675/76‑1 (MQ=255) agaTTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGcc < 2:3074868/76‑1 (MQ=255) ttCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGa < 2:1674081/76‑1 (MQ=255) aaaGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGt > 1:1657395/1‑76 (MQ=255) aaaGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGt < 2:2566084/76‑1 (MQ=255) aaGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGtt < 1:2095846/76‑1 (MQ=255) tGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAc > 2:3346614/1‑76 (MQ=255) tGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAc < 1:3702573/76‑1 (MQ=255) tCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAcgcc < 2:1321072/76‑1 (MQ=255) tCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTAcgcc < 1:734274/76‑1 (MQ=255) atatCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCa < 1:4360283/76‑1 (MQ=255) aTCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCAt > 1:1132906/1‑76 (MQ=255) ctaGTTGCTTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGTGAGGATAAGACGTGTGCGCCACGTCGTGCAttt > 1:4131486/3‑76 (MQ=255) atgcgcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCattn > 1:1877864‑M1/39‑75 (MQ=255) atgcgcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCAttt > 1:1948411‑M1/39‑76 (MQ=255) atgcgcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCAttt > 1:2632424‑M1/39‑76 (MQ=255) tgcgcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTtg > 1:4175944‑M1/38‑76 (MQ=255) tgcgcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTtg > 1:2503261‑M1/38‑76 (MQ=255) gcgcgtcttatcaggcctacggtttatgggcgaagtg < 1:3595733‑M1/1‑1 (MQ=255) aGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTtgt < 2:3953807/76‑1 (MQ=255) aGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTtgt < 1:562654/76‑1 (MQ=255) aGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTtgt < 1:1620068/76‑1 (MQ=255) cgcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTtgtg > 1:1790306‑M1/36‑76 (MQ=255) cgcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTtgtg < 1:4271423‑M1/41‑1 (MQ=255) cgcgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTtgtg > 1:523039‑M1/36‑76 (MQ=255) cgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgcg > 2:1921600‑M1/34‑76 (MQ=255) cgtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgcg < 2:2988833‑M1/43‑1 (MQ=255) gtcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTgcgc < 1:1771641‑M1/44‑1 (MQ=255) tcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGct > 1:3853712‑M1/32‑76 (MQ=255) tcttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGct > 1:3904577‑M1/32‑76 (MQ=255) attgaAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGct < 1:1999135/76‑1 (MQ=255) ttatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctga > 2:3268855‑M1/30‑76 (MQ=255) ttaacagccctagggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGACGCATCCGGCATTTGTGCGctga < 1:3331543‑M1/47‑1 (MQ=255) tcgcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGGGCGctgat > 1:4445633‑M1/29‑76 (MQ=255) tatcaggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgat > 2:707997‑M1/29‑76 (MQ=255) aaaaGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgc < 1:980817/76‑1 (MQ=255) aaaaGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgc > 1:1489257/1‑76 (MQ=255) caggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcc > 2:2232067‑M1/26‑76 (MQ=255) ggcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctg < 1:1102352‑M1/53‑1 (MQ=255) agagATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctg < 1:4519320/76‑1 (MQ=255) gcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctga > 1:1338999‑M1/23‑76 (MQ=255) gcctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctga > 2:1843895‑M1/23‑76 (MQ=255) gagaTGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctga > 1:2954123/1‑76 (MQ=255) cctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgat > 1:594401‑M1/22‑76 (MQ=255) cctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgat > 1:459818‑M1/22‑76 (MQ=255) cctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgacgcctgat < 2:2047122‑M1/55‑1 (MQ=255) agaTGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgat < 2:4055321/76‑1 (MQ=255) agaTGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgat > 2:2193817/1‑76 (MQ=255) ctacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatg > 2:2808035‑M1/21‑76 (MQ=255) tacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatgc < 1:3180591‑M1/57‑1 (MQ=255) tacggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGctgatgcctgatgc > 2:2713434‑M1/20‑76 (MQ=255) acggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCg > 2:2389130‑M1/19‑76 (MQ=255) acggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCg > 1:377549‑M1/19‑76 (MQ=255) ggTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGa > 2:1876361/1‑76 (MQ=255) cggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGcgc < 1:239761‑M1/59‑2 (MQ=255) ggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATgcgcc < 2:791796‑M1/60‑3 (MQ=255) ggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGAc > 1:2871336‑M1/17‑76 (MQ=255) ggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGAc > 2:1232198‑M1/17‑76 (MQ=255) ggtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGAc > 1:4038922‑M1/17‑76 (MQ=255) gTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGag > 1:4725856/1‑75 (MQ=255) gtttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGAtgcgcac < 1:4826602‑M1/61‑4 (MQ=255) tttatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGc < 2:3836971‑M1/62‑1 (MQ=255) taagtaagTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGAGACGc > 2:3706466/1‑76 (MQ=255) ttatgggggaagtGTGGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCt > 2:1093907‑M1/14‑76 (MQ=255) aagtaagtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCt < 1:2244741/76‑1 (MQ=255) tatgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTg < 2:3443163‑M1/64‑1 (MQ=255) atgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGCCGCTGa < 2:4491536‑M1/65‑1 (MQ=255) atgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGa > 1:808957‑M1/12‑76 (MQ=255) atgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGa < 2:4377434‑M1/65‑1 (MQ=255) tgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAc > 1:2425841‑M1/11‑76 (MQ=255) tgggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAc > 2:4851906‑M1/11‑76 (MQ=255) gggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcg > 2:4223665‑M1/10‑76 (MQ=255) gggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcg > 1:87188‑M1/10‑76 (MQ=255) gggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcg < 1:1228445‑M1/67‑1 (MQ=255) gggcgaagtGTAGACCGGATAAGACGTTTACGCCGCACCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcg < 1:2712127‑M1/67‑1 (MQ=255) aagtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcg > 1:401580/1‑76 (MQ=255) ggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgc > 1:2178886‑M1/9‑76 (MQ=255) ggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgc < 2:2272443‑M1/68‑1 (MQ=255) ggcgaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgc < 1:3256286‑M1/68‑1 (MQ=255) agtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgc > 2:3575181/1‑76 (MQ=255) gtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgcg < 1:4664250/76‑1 (MQ=255) gtCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGAcgcg < 1:1019760/76‑1 (MQ=255) gtCTGCCGTAGGCCGGATAAGACGTTTACGACGCATCAGGCATGCGTGCGCTGATGCCTGATGCGACGCTGAagcg > 1:4213115/1‑76 (MQ=17) ggaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGGTGATGCCTGATGCGACGCTGACGCGt > 2:4569285‑M1/7‑76 (MQ=255) gaagtGTAGACCGGATAAGCCGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTc > 1:4630833‑M1/6‑76 (MQ=255) gaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTc < 2:4141165‑M1/71‑1 (MQ=255) gaagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTc < 1:3541516‑M1/71‑1 (MQ=255) tGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCt > 2:251514/1‑76 (MQ=255) aagtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCt > 2:3166007‑M1/5‑76 (MQ=255) ggCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCtt < 2:2945527/76‑1 (MQ=255) agtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCtt > 1:3157692‑M1/4‑76 (MQ=255) agtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCtt > 2:1503262‑M1/4‑76 (MQ=255) agtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCtt > 2:1164095‑M1/4‑76 (MQ=255) gtGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTa > 1:3084891‑M1/3‑76 (MQ=255) tGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTAt > 2:574274‑M1/2‑76 (MQ=255) tGTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTAt < 1:899199‑M1/75‑1 (MQ=255) cGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTAt > 1:3389673/1‑76 (MQ=255) gTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATc > 1:3454575/1‑76 (MQ=255) gTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATc > 1:3650222/1‑76 (MQ=255) gTAGACCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATc < 2:1997530/76‑1 (MQ=255) | AGGAGATTCACATTAAAGTGATCCATATCCTGATCCAGTTGATTGAAAAAGAGATGGTTAAGTAAGTCTGGCGTAGGCCGGATAAGACGTTTACGCCGCATCCGGCATTTGTGCGCTGATGCCTGATGCGACGCTGACGCGTCTTATC > NC_000913/244057‑244204 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |