New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1977295 =	0 (0.000)	79 (0.580)	57/150	1.1	100%	intergenic (‑56/‑482)	insA5/yecG	IS1 protein InsA/putative regulator
	?	NC_000913	= 2100969	NA (NA)					coding (443/474 nt) coding (443/444 nt)	b4529 yefJ	hypothetical protein putative glycosyl transferase

CTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1977368‑1977295 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT  <  NC_000913/2100969‑2100896                                                                                                                                                      CTTGCTCGCGTAGCGCAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTGATGTT                                                                          >  1:1362486/1‑76 CTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTT                                                                          >  1:1357770/1‑76  TTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTA                                                                         <  2:879125/76‑1  TTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTA                                                                         >  2:593718/1‑76  TTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTA                                                                         >  2:2073659/1‑76   TGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAA                                                                        >  1:1389285/1‑76    GCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAG                                                                       >  2:1302609/1‑76      TAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGA                                                                     <  2:2562411/76‑1          GTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGg                                                                 >  2:379703/1‑75            AGCGAAAAACTTTTTAACAGATTGAAATACACCCACAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC                                                               >  2:1080777/1‑76            AGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC                                                               >  2:2458385/1‑76            AGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGC                                                               >  1:4792167/1‑76             gctAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAGGGAAGGTGCG                                                              <  2:406973/73‑1              CGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGA                                                             >  2:3358699/1‑76               GAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAA                                                            >  1:980605/1‑76                AAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAAC                                                           >  2:4220555/1‑76                AAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAAC                                                           >  1:2518786/1‑76                AAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAAC                                                           >  2:2008805/1‑76                 AAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACA                                                          >  2:4853599/1‑76                 AAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACA                                                          <  1:2255148/76‑1                 AAAACTTTGTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACA                                                          <  1:2271584/76‑1                  AAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAA                                                         >  1:1175597/1‑76                  AAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAA                                                         <  1:3081984/76‑1                    ACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGT                                                       >  2:1365214/1‑76                         TTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTG                                                  <  2:2247061/76‑1                         TTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTG                                                  <  1:40125/76‑1                         TTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTG                                                  >  2:1498045/1‑76                            ACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATA                                               <  2:1752020/76‑1                             CAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATAT                                              >  1:1781110/1‑76                                ATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAG                                           <  1:4613259/76‑1                                 TTGAAATACACCCCAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGA                                          >  2:1865162/1‑76                                   GAAATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATC                                        <  1:1220561/76‑1                                     AATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCAT                                      <  2:2101949/76‑1                                     AATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCAT                                      >  1:2092347/1‑76                                      ATACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGCGCGAACAAGTCCCTGATATGAGATCATG                                     <  2:1367667/76‑1                                       TACACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGT                                    <  1:1185066/76‑1                                         CACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATCTGAGATCATGTTT                                  >  1:136389/1‑76                                         CACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTT                                  >  1:143903/1‑76                                          ACCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTG                                 >  2:2871455/1‑76                                           aCCAAAAAAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT                                <  2:2803897/75‑1                                           CCCAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGT                                <  2:1029029/76‑1                                             CAAAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCA                              <  2:1073524/76‑1                                               AAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC                            >  2:3125603/1‑76                                               AAACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATC                            >  2:1919214/1‑76                                                AACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT                           <  1:4483508/76‑1                                                 ACAAAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTG                          >  1:1943976/1‑76                                                    AAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAG                       >  1:2138456/1‑76                                                    AAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAG                       >  1:2173420/1‑76                                                    AAAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAG                       >  1:1380824/1‑76                                                     AAGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGC                      <  1:2861344/76‑1                                                      AGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCC                     <  2:2082401/76‑1                                                      AGTATGACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCC                     >  2:2539306/1‑76                                                           GACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGA                >  1:2091864/1‑76                                                           GACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGA                <  1:4213582/76‑1                                                            ACTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAA               >  1:498827/1‑76                                                             CTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAC              >  1:4858974/1‑76                                                             CTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAC              >  1:915941/1‑76                                                             CTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAC              >  1:181563/1‑76                                                             CTTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAC              <  2:2138455/76‑1                                                             CTTATACATGTAGGGTAAGGAAGGTGCGAACAAGTCCCGGATATGAGATCATGGTTGTCATCTGGAGCCATAGAAC              <  2:2173419/76‑1                                                              TTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACA             >  2:1658738/1‑76                                                              TTATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACA             >  1:1398126/1‑76                                                               TATACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAG            >  1:225853/1‑76                                                                 TACATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGG          <  1:1252432/76‑1                                                                  ACATTTATGTTAAGGAAGGTGCGAACAAGGCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGc         >  2:1544098/1‑75                                                                  ACATTTATGTTAAGGAAGGGGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGT         >  2:4220187/1‑76                                                                   CATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTT        <  2:2518786/76‑1                                                                   CATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTT        <  1:3997898/76‑1                                                                    ATTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTC       <  2:2732811/76‑1                                                                     TTTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCA      >  1:3714695/1‑76                                                                      TTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCAT     >  1:362570/1‑76                                                                      TTATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCAT     <  2:4503702/76‑1                                                                       TATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATC    >  2:1139708/1‑76                                                                       TATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGAGCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATC    <  1:2424249/76‑1                                                                        ATGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCA   >  1:2572375/1‑76                                                                         TGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCTGAGAATAGGGTTGATCAT  >  1:406967/1‑76                                                                         TGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT  <  2:3891173/76‑1                                                                         TGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT  >  2:3135024/1‑76                                                                         TGTTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT  <  1:1804227/76‑1                                                                                                                                                      CTTGCTAGCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATACATTTATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1977368‑1977295 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCAT  <  NC_000913/2100969‑2100896

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.