| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1977295 = | 0 (0.000) | 79 (0.580) | 57/150 | 1.1 | 100% | intergenic (‑56/‑482) | insA5/yecG | IS1 protein InsA/putative regulator |
| ? | NC_000913 | = 2100969 | NA (NA) | coding (443/474 nt) coding (443/444 nt) |
b4529 yefJ |
hypothetical protein putative glycosyl transferase |
|||||
GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCG > NC_000913/2100898‑2101044 | gatgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATccc > 1:491639/1‑76 (MQ=34) tgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCGCCTTCCTTAATCCCTa < 1:3083995/76‑1 (MQ=255) tgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTa < 1:851173/76‑1 (MQ=38) tgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTa < 2:2027252/76‑1 (MQ=38) gaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCCCCTTCCTTAATCCCTaa < 1:1438463/76‑1 (MQ=255) gaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTaa < 2:4397688/76‑1 (MQ=39) aaCCCTGTTCTATGGCTCCAGATGACACACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAAc > 1:194484/1‑76 (MQ=255) aaCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAAc > 1:169824/1‑76 (MQ=40) aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACa > 2:407195/1‑76 (MQ=255) aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACa < 1:3711848/76‑1 (MQ=255) cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACAt < 2:3589472/76‑1 (MQ=255) cccTGTTCTATGGCTCCACATGACAAACATCATCTCATATCACGTACTTGTTCGCACCCTCCTCAATCCCTAACaa > 2:962503/1‑75 (MQ=14) cccGGTTCTCTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACAt < 2:3581634/76‑1 (MQ=255) tGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATaaa < 2:4211275/76‑1 (MQ=255) tGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATaaa < 2:6490/76‑1 (MQ=255) tGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATaaa > 1:2642507/1‑76 (MQ=255) gTTCTATGGCTCCATATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAAt < 1:161154/76‑1 (MQ=255) gTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAAt < 2:10256/76‑1 (MQ=255) ttCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATg > 1:2097086/1‑76 (MQ=255) tCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGa < 2:4374018/76‑1 (MQ=255) tATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGaca < 1:3131004/76‑1 (MQ=255) aTGGCGCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGacac < 2:797359/76‑1 (MQ=255) tGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCGCCTTCCTTAATCCCTAACATAAATGAcaca < 1:2447511/76‑1 (MQ=255) tGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGAcaca < 1:407195/76‑1 (MQ=255) tGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGAcaca > 2:3864887/1‑76 (MQ=255) ggCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACaa < 1:660643/76‑1 (MQ=255) gCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAAt < 1:2154413/76‑1 (MQ=255) cTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATa > 1:4220978/1‑76 (MQ=255) tCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATaa < 1:4459646/76‑1 (MQ=255) ccggATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATaaa < 2:4860923/73‑1 (MQ=255) cAGCTGACAAACATGATCTCATATCAGGGACTTGTTCGCTCCTTCCTTAATCCCTAACATAAATGACACAATaaca < 2:4207878/76‑3 (MQ=21) aGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAAt < 1:1192658/76‑1 (MQ=255) gATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATc < 1:2814027/76‑1 (MQ=255) cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGaaa < 1:219577/76‑1 (MQ=255) cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGaaa < 2:1106763/76‑1 (MQ=255) aaaCATGATCTCATATCAGGTACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAg < 1:3778548/76‑1 (MQ=255) aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGc > 1:509802/1‑76 (MQ=255) aaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGc < 1:488181/76‑1 (MQ=255) aCATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGca > 2:3851184/1‑76 (MQ=255) cATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGcac < 2:2560312/76‑1 (MQ=255) aTGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGcaca > 2:3560861/1‑76 (MQ=255) aTGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGcaca < 1:4411843/76‑1 (MQ=255) gATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAgg > 1:4034335/1‑76 (MQ=255) gATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAgg < 2:4663411/76‑1 (MQ=255) gATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAga > 2:3970294/1‑75 (MQ=255) gtctcATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGa < 2:4033715/75‑1 (MQ=255) aTCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGa < 2:4021142/76‑1 (MQ=255) aTCTCAGATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGa < 2:4033763/76‑1 (MQ=255) tctcATATCAGCGACTTGTTCGCACCTTCCTTAATCCCTAACAGAAATGACACAATAAAATCAGAGAGCACAGGaa < 2:666516/76‑1 (MQ=37) ctcATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAGTGACACAATAAAATCAGAACGCACAGGaaa < 1:962504/76‑1 (MQ=255) tcATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAAt < 1:3465447/76‑1 (MQ=255) cATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAAtt > 2:4041197/1‑76 (MQ=255) atatCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATaa < 1:1525011/54‑1 (MQ=255) atatCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATaa > 2:1525010/1‑54 (MQ=255) atCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTc > 1:4251835/1‑76 (MQ=255) atCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTc < 1:4334707/76‑1 (MQ=255) cAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCtt > 2:2249035/1‑76 (MQ=255) aGGGACTTGTTCGCACCTTCCTTACTCCCTAACCTAAATGACACAATACAATCAGCAAGCACAGGAGATTTTCTTa > 1:1506203/1‑76 (MQ=25) aGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTa > 1:2676761/1‑76 (MQ=255) aGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTa < 1:3521878/76‑1 (MQ=255) aGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTa > 1:1477580/1‑76 (MQ=255) aGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTa < 1:3710278/76‑1 (MQ=255) gggACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTAc > 2:4706273/1‑76 (MQ=255) ggACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACg < 2:2802552/76‑1 (MQ=255) cTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGaa < 1:1050220/76‑1 (MQ=255) ttGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGaat > 1:4355666/1‑76 (MQ=255) tGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGaata < 2:3139903/76‑1 (MQ=255) tGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGaata < 2:4034335/76‑1 (MQ=255) gTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGaataa > 2:4801004/1‑76 (MQ=255) ttCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGaataat < 2:1047880/76‑1 (MQ=255) ttCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGaataat < 1:4545529/76‑1 (MQ=255) ttCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGaataat > 1:1776376/1‑76 (MQ=255) ttCGCACCTTCCGTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTGTCTGACGGaataat < 1:4576575/76‑1 (MQ=255) cGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCa > 1:2894559/1‑76 (MQ=255) cGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCa > 2:3911442/1‑76 (MQ=255) gCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCAt > 1:2594438/1‑76 (MQ=255) cACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATg < 1:720927/76‑1 (MQ=255) aCCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGt > 1:1278358/1‑76 (MQ=255) tccttAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAg < 1:3823345/76‑1 (MQ=255) ccttAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGa < 1:1764607/76‑1 (MQ=255) acatAATCCCTAAAATAAATGAATAAATAAAATCAGAAAGAACAGGAAATTTGCTTAAGGAATAATCAGGTAAAGa < 1:1791411/73‑1 (MQ=255) tAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGAttt < 1:316911/76‑1 (MQ=255) tAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGAttt > 1:4511903/1‑76 (MQ=255) aaTCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTc < 1:758191/76‑1 (MQ=255) aTCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCg < 2:2943988/76‑1 (MQ=255) aTCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCg > 1:1341300/1‑76 (MQ=255) aTCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCg < 1:1878026/76‑1 (MQ=255) | GATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCG > NC_000913/2100898‑2101044 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |