| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 279335 | NA (NA) | 108 (0.790) | 70/150 | 0.5 | 23.7% | coding (252/339 nt) | b4505 | hypothetical protein |
| ? | NC_000913 | 370982 = | 347 (2.540) | coding (535/882 nt) | mhpC | 2‑hydroxy‑6‑ketonona‑2,4‑dienedioic acid hydrolase | |||||
Only 100 of 578 total aligned reads displayed.
CCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGC > NC_000913/370907‑371057 | cgagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaa < 1:4116516‑M2/1‑1 (MQ=255) gagaaagacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaAt > 1:3949440‑M2/75‑76 (MQ=255) gATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGatgatg > 2:726252/1‑76 (MQ=255) gATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGatgatg < 2:2669120/76‑1 (MQ=255) gATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGatgatg < 1:3881365/76‑1 (MQ=255) gATGCAAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGGCGACTATCGAAAACCTGAAGCTGatgatg < 1:4720178/76‑1 (MQ=255) gCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGat < 1:892658/76‑1 (MQ=255) tcAACCGAGGGTAGTAAGGGACTGAATGAGCTTTATCGTCAGCCGTCTATCGAAAACCTGAAGATGATGATGGata < 2:1021893/75‑1 (MQ=255) ccAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGata < 1:3719767/76‑1 (MQ=255) gacactgaagttcaaaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGatat < 1:1705998‑M2/8‑1 (MQ=255) cAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGatat < 2:913008/76‑1 (MQ=255) aaCCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagat < 1:4492673‑M2/76‑8 (MQ=255) ccGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCtt < 1:4249114/76‑1 (MQ=255) gAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaa < 2:4504215‑M2/76‑12 (MQ=255) gAAGGCATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGCTGATtgtagcttcaa < 2:515222‑M2/76‑12 (MQ=255) aaGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCTACTATCGAAAACCTGAAGCTGCTGATtgtagattcaat > 2:4755171‑M2/1‑64 (MQ=255) aGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaatt < 1:2242853‑M2/76‑14 (MQ=255) aGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGtt < 1:405428/76‑1 (MQ=255) aGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAACATGATGATGGCTATCTTCgct > 2:399560/1‑74 (MQ=255) ggTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGttt < 1:2184347/76‑1 (MQ=255) tATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggt < 2:442887‑M2/76‑17 (MQ=255) tATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGttttt > 2:1899098/1‑76 (MQ=255) tATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGttttt > 2:1701176/1‑76 (MQ=255) aTTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtc > 1:440049‑M2/1‑59 (MQ=255) aTTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtc > 1:1943636‑M2/1‑59 (MQ=255) aTTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTg > 2:3169942/1‑76 (MQ=255) ttAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtca > 2:3365782‑M2/1‑58 (MQ=255) tAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaa > 2:4216186‑M2/1‑57 (MQ=255) tAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGAt > 2:1261063/1‑76 (MQ=255) aaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATa > 2:299147‑M2/55‑76 (MQ=255) aaacaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATa < 2:781833‑M2/22‑1 (MQ=255) aGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATAc < 2:3656156/76‑1 (MQ=255) acaccgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATAcc > 2:1414401‑M2/53‑76 (MQ=255) ctgcgaacgagatcattgaaaggtgttttgcattgacggattgaatctacaATGGATATCTTCGTTTTTGATACCa < 1:4610104‑M2/25‑1 (MQ=255) gACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaa > 2:2289935‑M2/1‑52 (MQ=255) gACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAg < 1:3778426/76‑1 (MQ=255) accgaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAg < 2:3094732‑M2/26‑1 (MQ=255) acggAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGc < 2:1491328/73‑1 (MQ=255) aCTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGc > 1:3613221/1‑76 (MQ=255) cTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCg < 1:3047007/76‑1 (MQ=255) taaaTCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGa < 2:2733012/74‑1 (MQ=255) gaaagagataattgaaaggggtgttgcattgacagattgagtctacaATGGATATCTTCGTTTTTGATACCAGCGa > 1:3548391‑M2/48‑76 (MQ=255) gaaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGa < 1:2855625‑M2/29‑1 (MQ=255) aaagagataattgaaaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGAt > 2:1448804‑M2/47‑76 (MQ=255) aaTCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGAtt > 2:3541057/1‑76 (MQ=255) aTCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGAttt < 1:2583400/76‑1 (MQ=255) aTCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGAttt > 1:606273/1‑76 (MQ=255) aTCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGAttt < 1:2436329/76‑1 (MQ=255) tCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTg < 2:1822738/76‑1 (MQ=255) tCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTg > 2:648803/1‑76 (MQ=255) cAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGa > 2:3719631/1‑76 (MQ=255) aGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgt < 2:3901467‑M2/76‑34 (MQ=255) gCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATc > 1:492207/1‑49 (MQ=255) gCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGAcc < 1:3311013/76‑1 (MQ=255) tATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACg < 2:4651523/76‑1 (MQ=255) ttcGGCAGCCGACTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaac > 2:2006762‑M2/2‑37 (MQ=255) gTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCt < 1:1617358/76‑1 (MQ=255) aaggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCt > 1:2637333‑M2/33‑76 (MQ=255) ggggtgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGt > 2:4276435‑M2/31‑76 (MQ=255) cAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGt > 1:231433/1‑76 (MQ=255) cAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGt < 1:4789449/76‑1 (MQ=255) aGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTgct > 1:1243849/1‑74 (MQ=255) aGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGtt > 2:2483137/1‑76 (MQ=255) ccaactaTCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggtt < 1:3191637‑M2/73‑48 (MQ=255) tgttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGa > 1:1151892‑M2/27‑76 (MQ=255) cGACTATCGAGAACCTGGAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttg > 2:3854016‑M2/1‑28 (MQ=255) cGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGa < 1:804523/76‑1 (MQ=255) cGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGa > 2:865601/1‑76 (MQ=255) cGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGa > 1:1540279/1‑76 (MQ=255) gttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGaa > 2:3784615‑M2/26‑76 (MQ=255) gtctaTCGAAAACCTGAAGCTGATGATtgtcgattcaattggtcaacgccccagttatgtgaaatcatggggttgc > 1:1049733‑M2/3‑27 (MQ=255) ttgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCCACGCCCTGTTTGCAg > 2:4695844‑M2/25‑76 (MQ=255) tgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAgc > 1:176456‑M2/24‑76 (MQ=255) tgcattgacagattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAgc > 1:2732622‑M2/24‑76 (MQ=255) cTATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcgg > 1:2553147‑M2/1‑25 (MQ=255) tATCGAAAACCTGAAGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcgga > 1:467318‑M2/1‑24 (MQ=255) tATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAgcg > 2:2527476/1‑76 (MQ=255) gcattgaccgattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAgcg > 2:2885373‑M2/23‑76 (MQ=255) aTCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAgcgc < 2:2427218/76‑1 (MQ=255) tCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAgcgcg > 1:3374080/1‑76 (MQ=255) cGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAgcgcgc > 2:1757677/1‑76 (MQ=255) cGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAgcgcgc > 1:1451544/1‑76 (MQ=255) gAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGcc < 2:2215297/76‑1 (MQ=255) aaCCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGa < 2:1967280/76‑1 (MQ=255) gattgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGaat > 2:2160475‑M2/14‑76 (MQ=255) ccTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGaat < 1:1679354/76‑1 (MQ=255) tGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGaataa < 2:4375837/76‑1 (MQ=255) tgaatctacaATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGaataat < 1:2483051‑M2/66‑1 (MQ=255) gAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGaataat > 1:2768113/1‑76 (MQ=255) aaGCTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatg > 2:3279822‑M2/1‑11 (MQ=255) aaGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAataata > 1:3448402/1‑76 (MQ=255) gttgatgaTGGATATCTTGGTTTTTGGTACGAGCGATTTGGCCGACGCCCTGTTTGAAGCGCGCCTGAATAATATg < 2:1346603/74‑1 (MQ=255) cTGATGATtgtagattcaattggtcaacgcaacagttatgtgaaaacatggggttgcggaggttttttgaatgaga > 2:1140458‑M2/1‑8 (MQ=255) cTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGc > 1:2067737/1‑76 (MQ=255) cTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGc > 1:4323005/1‑76 (MQ=255) tgatgaTGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCt > 1:1294852/1‑76 (MQ=255) atgatgGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGt > 1:654722/1‑76 (MQ=255) tgatgGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTc < 1:4185323/76‑1 (MQ=255) gatgGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTcg > 2:1639525/1‑76 (MQ=255) atgGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTcgc > 1:2834775/1‑76 (MQ=255) | CCGATGCCAACCGAAGGTATTAAGCGACTGAATCAGCTTTATCGTCAGCCGACTATCGAAAACCTGAAGCTGATGATGGATATCTTCGTTTTTGATACCAGCGATTTGACCGACGCCCTGTTTGAAGCGCGCCTGAATAATATGCTGTCGC > NC_000913/370907‑371057 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |