| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 17289 = | 60 (0.740) | 7 (0.090) | 3/92 | NT | 9.8% | intergenic (‑329/‑200) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/sodium‑proton antiporter |
| ? | W3110S.gb | 17320 = | 73 (0.950) | intergenic (‑360/‑169) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/sodium‑proton antiporter | |||||
GCGGTGAGATGCGTTTTTGACGGCTGTAAGCGCTCACGAGTGACCCTAAGCCTAGATAATCATAGCTTAAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/17361‑17289‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtCACTCGTGAGCGCTTACAGCCGTCAAAAACGCATCTCACCGCTGATGGCGCAAATTCTTCAATAGCTCG > W3110S.gb/17320‑17388 GCGGTGAGATGCGTTTTTGACGGCTGTAAGCGCTCACGAGTGACCCTAAGCCTAGATAATCATAGCTTAAG > 1:7726128/1‑71 GCGTTTTTGACGGCTGTAAGCGCTCACGAGTGACCCTAAGCCTAGATAATCATAGCTTAAG > 1:7458954/1‑61 TTTGACGGCTGTAAGCGCTCACGAGTGACCCTAAGCCTAGATAATCATAGCTTAAGGT > 1:7743970/1‑58 GCTGTAAGCGCTCACGAGTGACCCTAAGCCTAGATAATCATAGCTTAAGG < 1:2684606/50‑1 GCTGTAAGCGCTCACGAGTGACCCTAAGCCTAGATAATCATAGCTTAAGG < 1:5679067/50‑1 CGCTCACGAGTGACCCTAAGCCTAGATAATCATAGCTTAAGGT > 1:273840/1‑43 CGCTCACGAGTGACCCTAAGCCTAGATAATCATAGCTTAAGGT > 1:3611551/1‑43 CGCTCACGAGTGACCCTAAGCCTAGATAATCATAGCTTAAGGT > 1:6874105/1‑43 CCTAAGCCTAGATAATCATAGCTTAAGGTCACTCGTGAGCGCTTACAGCCGT < 1:2446496/52‑1 TAAGCCTAGATAATCATAGCTTAAGGTCACTCGTGAGCGCTTACAGCCGTCA > 1:2292048/1‑52 TAAGCCTAGATAATCATAGCTTAAGGTCACTCGTGAGCGCTTACAGCCGTCA > 1:4315231/1‑52 TAAGCCTAGATAATCATAGCTTAAGGTCACTCGTGAGCGCTTACAGCCGTCA > 1:4228354/1‑52 TAAGCCTAGATAATCATAGCTTAAGGTCACTCGTGAGCGCTTACAGCCGTCA > 1:237570/1‑52 TAAGCCTAGATAATCATAGCTTAAGGTCACTCGTGAGCGCTTACAGCCGTCA > 1:1702294/1‑52 GCCTAGATAATCATAGCTTAAGGTCACTCGTGAGCGCTTACAGCCGTCAAAAACGCATCT < 1:3795227/60‑1 GGTCACTCGTGAGCGCTTACAGCCGTCAAAAACGCATCTCACCGCTGATGGCGCAAATTCTTCAATAGCTC > 1:5713608/1‑71 TCACTCGTGAGCGCTTACAGCCGTCAAAAACGCATCTCACCGCTGATGGCGCAAATTCTTCAATAGCTCG > 1:2380921/1‑70 GCGGTGAGATGCGTTTTTGACGGCTGTAAGCGCTCACGAGTGACCCTAAGCCTAGATAATCATAGCTTAAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/17361‑17289‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtCACTCGTGAGCGCTTACAGCCGTCAAAAACGCATCTCACCGCTGATGGCGCAAATTCTTCAATAGCTCG > W3110S.gb/17320‑17388 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |