| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1533752 = | NA (NA) | 8 (0.110) | 4/86 | NT | 17.5% | coding (223/1137 nt) | ydcC | conserved hypothetical protein |
| ? | W3110S.gb | = 4015844 | 43 (0.530) | coding (196/1137 nt) | yhhI | predicted transposase | |||||
AGTCACGCATCCAGTTAATAAAGCACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCaatggt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/1533818‑1533752‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATGGTATTCCTGTTCACGATACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTA < W3110S.gb/4015844‑4015769 AGTCACGCATCCAGTTAATAAAGCACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATG > 1:5253089/1‑71 TCACGCATCCAGTTAATAAAGCACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGT < 1:1755585/71‑1 TCACGCATCCAGTTAATAAAGCACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGT > 1:5024969/1‑71 TCACGCATCCAGTTAATAAAGCACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGG > 1:478348/1‑70 CACGCATCCAGTTAATAAAGCACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTA > 1:864575/1‑71 ACGCATCCAGTTAATAAAGCACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAA < 1:5048344/65‑1 ACGCATCCAGTTAATAAAGCACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAA < 1:2478385/65‑1 CAGTTAATAAAGCACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTAT > 1:1170542/1‑64 AGTTAATAAAGCACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAA > 1:7410632/1‑57 AGTTAATAAAGCACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAA > 1:6832014/1‑57 AGTTAATAAAGCACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAA > 1:4223275/1‑57 GCACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAA > 1:5911890/1‑47 TCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCA < 1:976238/42‑1 TCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCA < 1:2309219/42‑1 TGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAAT < 1:2030848/41‑1 TGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAAT < 1:4494471/41‑1 TGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAA > 1:3767346/1‑40 TGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAA > 1:6760384/1‑40 GAAATTTTGCAGGACTGATACAGGATACAACTCTGGCA < 1:5719558/38‑1 AATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATTCCTGTTCACG < 1:4341389/54‑1 ATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTAT > 1:2253597/1‑42 TTTTGCAGGACTGTTACAGGATACAACTCTGGCAATGGT > 1:6318670/1‑39 TTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGT > 1:4385679/1‑39 TTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGT > 1:2715266/1‑39 TTTTGCAGGACTGATACAGGATACAACTCTGGCAA < 1:3659450/35‑1 TTTTGCAGGACTGATACAGGATACAACTCTGGCAA < 1:1876099/35‑1 ACAGGATACAACTCTGGCAATGGTATTCCTGTTCACGATACCATT > 1:3110790/1‑45 ACAGGATACAACTCTGGCAATGGTATTCCTGTTCACGATACCATT > 1:6386568/1‑45 GGATACAACTCTGGCAATGGTATTCCTGTTCACGATA > 1:1813301/1‑37 GGATACAACTCTGGCAATGGTATTCCTGTTCACGATA > 1:1822754/1‑37 GGATACAACTCTGGCAATGGTATTCCTGTTCACGATA > 1:36411/1‑37 GATACAACTCTGGCAATGGTATTCCTGTTCACGATACC < 1:5619964/38‑1 ATACAACTCTGGCAATGGTATTCCTGTTCACGATACC < 1:4034983/37‑1 AATGGTATTCCTGTTCACGATACCATTGCCAGAGTTGTATCCTG > 1:5490572/1‑44 ATGGTATTCCTGTTCACGATACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAA < 1:5588787/57‑1 ATGGTATTCCTGTTCACGATACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAA < 1:6119446/57‑1 TGGTATTCCTGTTCACGATACCATTGCCAGAGTTGTATCCTGTA < 1:1158026/44‑1 TGGTATTCCTGTTCACGATACCATTGCCAGAGTTGTATCCTGTA < 1:4761511/44‑1 TGGTATTCCTGTTCACGATACCATTGCCAGAGTTGTATCCTGTA < 1:4775857/44‑1 GGTATTCCTGTTCACGATACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAA > 1:4252318/1‑57 GGTATTCCTGTTCACGATACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAA > 1:770296/1‑57 GTATTCCTGTTCACGATACCATTGCCAGAGTTGTATCCTGTATCAGTC > 1:3922170/1‑48 TATTCCTGTTCACGATACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTA < 1:237009/71‑1 AGTCACGCATCCAGTTAATAAAGCACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCaatggt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < W3110S.gb/1533818‑1533752‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATGGTATTCCTGTTCACGATACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTA < W3110S.gb/4015844‑4015769 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |