| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1533752 = | NA (NA) | 8 (0.110) | 4/86 | NT | 17.5% | coding (223/1137 nt) | ydcC | conserved hypothetical protein |
| ? | W3110S.gb | = 4015844 | 43 (0.530) | coding (196/1137 nt) | yhhI | predicted transposase | |||||
ACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGT > W3110S.gb/1533686‑1533814 | acacATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCa < 1:2894922/70‑1 (MQ=35) cacaTCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCa > 1:3308994/1‑69 (MQ=35) cacaTCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCa > 1:2361698/1‑69 (MQ=35) cacaTCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCa > 1:5779732/1‑69 (MQ=35) caTCGCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCagag < 1:2969469/70‑1 (MQ=25) caTCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCagag < 1:4355993/70‑1 (MQ=35) caTCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCagag < 1:5586557/70‑1 (MQ=35) aTCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGtt > 1:2336961/1‑71 (MQ=34) cccGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTg > 1:4106901/1‑70 (MQ=35) cccGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTg > 1:2464070/1‑70 (MQ=35) gATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATc < 1:5041779/71‑1 (MQ=34) aTTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATcc < 1:4939957/71‑1 (MQ=34) aTTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATc < 1:5166698/70‑1 (MQ=35) aTTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATc < 1:7462564/70‑1 (MQ=35) aTTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATc < 1:6348657/70‑1 (MQ=35) ttttttGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCt < 1:5255544/71‑1 (MQ=34) tttGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGt < 1:323561/70‑1 (MQ=35) tttGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTa > 1:5702696/1‑71 (MQ=34) gAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTAt > 1:4876967/1‑69 (MQ=35) gAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTAt < 1:7489459/69‑1 (MQ=35) gAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATc < 1:3737674/70‑1 (MQ=35) gAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATc < 1:3972895/70‑1 (MQ=35) cAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTcc < 1:297137/71‑1 (MQ=34) cAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTcc < 1:7888074/71‑1 (MQ=34) aaTATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATc < 1:2534699/58‑1 (MQ=35) aaTATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATc < 1:2525418/58‑1 (MQ=35) aaTATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATc < 1:833576/58‑1 (MQ=35) aaTATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATc < 1:1908412/58‑1 (MQ=35) tGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCa > 1:809281/1‑70 (MQ=35) gTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCaaaa < 1:4912444/71‑1 (MQ=34) tGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAAt < 1:3604770/71‑1 (MQ=34) gATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATc < 1:3176821/50‑1 (MQ=38) aTTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATc > 1:5223940/1‑49 (MQ=38) aTTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATc > 1:3599899/1‑49 (MQ=38) aTTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAg < 1:1842369/58‑1 (MQ=35) aTTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAAttt < 1:6209977/71‑1 (MQ=34) ttttGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAAttt < 1:5867023/70‑1 (MQ=35) tttGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTg > 1:1646761/1‑43 (MQ=38) tttGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTg > 1:7124994/1‑43 (MQ=38) tttGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATc < 1:5691125/47‑1 (MQ=38) tttGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGt < 1:3528245/57‑1 (MQ=35) tttGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTc > 1:7084333/1‑70 (MQ=35) tttGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCa > 1:2990570/1‑71 (MQ=34) tGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTcc > 1:6034149/1‑57 (MQ=35) tGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTcc > 1:5401271/1‑57 (MQ=35) aaaTGGTATTCCTGTTCACGACACCATTGCCagag > 1:1634353/1‑35 (MQ=40) aaaTGGTATTCCTGTTCACGACACCATTGCCagag > 1:6213201/1‑35 (MQ=40) aaaTGGTATTCCTGTTCACGACACCATTGCCagag > 1:923145/1‑35 (MQ=40) aaaTGGTATTCCTGTTCACGACACCATTGCCagag > 1:3767406/1‑35 (MQ=40) aaaTGGTATTCCTGTTCACGACACCATTGCCagag > 1:2640598/1‑35 (MQ=40) aaTGGTATTCCTGTTCTCGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGt > 1:3563021/1‑70 (MQ=25) aaTGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCAc < 1:7455051/66‑1 (MQ=35) aaTGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTg < 1:38278/71‑1 (MQ=34) aTGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGc < 1:5135895/71‑1 (MQ=34) tGGTATTCGTGTTCACGACACCATTGCCAGAGTTGTATCCt < 1:2840926/41‑1 (MQ=255) tGGTATTCCTGTTCACGACACCATTTCCAGAGTTGTATCCt < 1:3141357/41‑1 (MQ=255) tGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCt < 1:3890504/41‑1 (MQ=38) tGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCt < 1:4016860/41‑1 (MQ=38) tGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCt < 1:7464182/41‑1 (MQ=38) tGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCt < 1:3889260/41‑1 (MQ=38) tGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCt < 1:6998779/71‑1 (MQ=34) tATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTtta < 1:5090411/71‑1 (MQ=34) aTTCCTGTTCACTACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCaa < 1:3358646/52‑1 (MQ=255) aTTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCaa < 1:1800086/52‑1 (MQ=35) aTTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCa < 1:2962085/59‑1 (MQ=35) aTTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCa < 1:7673573/59‑1 (MQ=35) aTTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCa < 1:655201/59‑1 (MQ=35) aTTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCa < 1:4710899/59‑1 (MQ=35) aTTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCa < 1:5558930/59‑1 (MQ=35) aTTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTtta < 1:6277183/70‑1 (MQ=35) ttCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTttatt < 1:6917948/71‑1 (MQ=34) tCCTGTTCACGACACCATTGCAAGAGTTGTATCCTGTATAAGTCCTGCAAAATTTCACGAGTGCTttatt > 1:809927/1‑70 (MQ=11) ccTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCaa < 1:4195533/49‑1 (MQ=38) ccTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGa > 1:4447838/1‑59 (MQ=35) ccTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTaa > 1:6290264/1‑71 (MQ=34) cTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTc < 1:7792428/42‑1 (MQ=38) cTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTc < 1:4131156/42‑1 (MQ=38) tGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAAttt < 1:2646157/52‑1 (MQ=35) tGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACt > 1:5437493/1‑71 (MQ=34) tGTTCACGACACCATTGCAAGAGTTGTATCCTGTATCAGTCCTGCAAAAttt > 1:599718/1‑52 (MQ=255) ttCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCa > 1:2179430/1‑52 (MQ=35) ttCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCa > 1:2188624/1‑52 (MQ=35) ttCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTgg < 1:2784111/71‑1 (MQ=34) ttCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTg > 1:1004712/1‑70 (MQ=35) ttCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTg > 1:3522643/1‑70 (MQ=35) ttCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTg > 1:6925977/1‑70 (MQ=35) cACGACACCATTGCCAGAGTTGTATCCTGTATCAGTcc > 1:4668630/1‑38 (MQ=40) cACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCt > 1:1056717/1‑39 (MQ=40) cACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCt > 1:3966134/1‑39 (MQ=40) cACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAAttt > 1:6689678/1‑48 (MQ=38) cACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGAt > 1:5317520/1‑71 (MQ=34) aCGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGt > 1:463738/1‑54 (MQ=35) aCGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGt > 1:2352085/1‑54 (MQ=35) aCGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGAt < 1:2316650/70‑1 (MQ=35) cGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGC‑TTATTAACTGGATgag > 1:624211/1‑69 (MQ=255) gACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCg > 1:5949806/1‑71 (MQ=34) gACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCg > 1:4608678/1‑71 (MQ=34) acacCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCa < 1:4918481/46‑1 (MQ=35) acacCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGt < 1:6537417/71‑1 (MQ=32) acacCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGt < 1:133060/71‑1 (MQ=32) | ACACATCCCGATTTTTTGAAGCAATATGGTGATTTTGAAAATGGTATTCCTGTTCACGACACCATTGCCAGAGTTGTATCCTGTATCAGTCCTGCAAAATTTCACGAGTGCTTTATTAACTGGATGCGT > W3110S.gb/1533686‑1533814 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |