| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 1533752 = | NA (NA) | 8 (0.110) | 4/86 | NT | 17.5% | coding (223/1137 nt) | ydcC | conserved hypothetical protein |
| ? | W3110S.gb | = 4015844 | 43 (0.530) | coding (196/1137 nt) | yhhI | predicted transposase | |||||
ACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCTATATCTTCCCAACCT > W3110S.gb/4015775‑4015914 | aCTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCAttt < 1:4744681/71‑1 (MQ=34)aCTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCAttt < 1:5629541/71‑1 (MQ=34) cTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTTAACAGGAATACCAtttt > 1:6858292/1‑71 (MQ=21) tCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCAtttt > 1:6021495/1‑70 (MQ=35) gTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCaa < 1:134304/71‑1 (MQ=34) gTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATAGTGAACAGGAATACCATTTTCa > 1:3797924/1‑70 (MQ=25) tGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCaaa < 1:3223373/71‑1 (MQ=34) tGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCaaa < 1:5878271/71‑1 (MQ=34) gAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCaaaa > 1:7661808/1‑71 (MQ=34) aaaTTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCaaaa > 1:7564116/1‑70 (MQ=35) aaaTTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAAt > 1:3686675/1‑71 (MQ=34) aaaTTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAAt < 1:5518389/71‑1 (MQ=34) aaaTTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAAt > 1:4081039/1‑71 (MQ=34) aaaTTTTGCAGGACTGATACAGGATACAACTCTGGAAATGGTATCGTGAACAGGAATACCATTTTCaaaa > 1:2622605/1‑70 (MQ=25) aaTTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAAt > 1:4025053/1‑70 (MQ=35) aaTTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAAt > 1:7128250/1‑70 (MQ=35) aaTTTTACAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAAt > 1:1025838/1‑70 (MQ=25) aTTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCa > 1:6295957/1‑71 (MQ=34) aTTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCa < 1:1603665/71‑1 (MQ=34) tttGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCAc > 1:2040184/1‑70 (MQ=35) ttGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCAcc > 1:774697/1‑70 (MQ=35) ttGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCAcc > 1:5394386/1‑70 (MQ=35) cAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCACCatat < 1:5694081/71‑1 (MQ=34) aGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCaaa < 1:165284/60‑1 (MQ=35) aGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCaa < 1:2219820/59‑1 (MQ=35) aGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCaa < 1:5825226/59‑1 (MQ=35) aGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCa < 1:5209339/64‑1 (MQ=35) aGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCACCa < 1:4504921/67‑1 (MQ=35) gACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTc > 1:6607821/1‑55 (MQ=35) gACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCa > 1:5136210/1‑62 (MQ=35) gACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCACCat < 1:4291605/66‑1 (MQ=35) gACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCACCATATTGc < 1:4533083/71‑1 (MQ=34) gACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCACCATATTGc < 1:4574470/71‑1 (MQ=34) gACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCACCATATTGc < 1:3818087/71‑1 (MQ=34) gACTGATACAGGATACAACTCTGGCAATGGAATCGTGAACAGGAATACCATTTTCAAAATCACCATATTGc < 1:240099/71‑1 (MQ=21) aatGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCa > 1:5602453/3‑61 (MQ=14) aCTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCAc > 1:7500556/1‑62 (MQ=35) aCTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCACCata > 1:451255/1‑66 (MQ=35) aCTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCACCATATTGCt < 1:636782/71‑1 (MQ=34) aCTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCACCATATTGCt < 1:2516864/71‑1 (MQ=34) cAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATT > 1:5490572‑M2/1‑44 (MQ=255) aaTGGTATCGTGAACAGGAATACCATTgccagagttgtatcctgt > 1:3110790‑M2/1‑27 (MQ=255) aaTGGTATCGTGAACAGGAATACCATTgccagagttgtatcctgt > 1:6386568‑M2/1‑27 (MQ=255) ggTATCGTGAACAGGAATACCATTgccagagttgtatc < 1:5619964‑M2/38‑15 (MQ=255) ggTATCGTGAACAGGAATACCATTgccagagttgtat < 1:4034983‑M2/37‑14 (MQ=255) tATCGTGAACAGGAATACCATTgccagagttgtatcc > 1:1822754‑M2/1‑22 (MQ=255) tATCGTGAACAGGAATACCATTgccagagttgtatcc > 1:1813301‑M2/1‑22 (MQ=255) tATCGTGAACAGGAATACCATTgccagagttgtatcc > 1:36411‑M2/1‑22 (MQ=255) tCGTGAACAGGAATACCATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATc > 1:2159294/1‑71 (MQ=34) tCGTGAACAGGAATACCATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATc < 1:3407011/71‑1 (MQ=34) cGTGAACAGGAATACCATTgccagagttgtatcctgtatcagtcctgcaaaatt < 1:4341389‑M2/54‑36 (MQ=255) gTGAACAGGAATACCATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATcc < 1:6633787/70‑1 (MQ=35) gAACAGGAATACCATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCaaa > 1:5568962/1‑64 (MQ=35) aaCAGGAATACCATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCctct < 1:7327490/70‑1 (MQ=35) cAGGAATACCATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCtata > 1:5607248/1‑71 (MQ=34) cAGGAATACCATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCtata > 1:3198010/1‑71 (MQ=34) ggAATACCATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCTATATc < 1:6378559/71‑1 (MQ=34) gAATACCATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCtata < 1:3373335/68‑1 (MQ=35) gAATACCATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCtata < 1:2918372/68‑1 (MQ=35) gAATACCATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCTATATCt < 1:1179048/71‑1 (MQ=34) aTACCATTgccagagttgtatcctgtatcagtcctgcaaaatttcacgagtgctttattaactg > 1:1170542‑M2/1‑8 (MQ=255) aTACCATTgccagagttgtatcctgtatcagtcctgcaaaat > 1:2253597‑M2/1‑8 (MQ=255) aTACCATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCTATATCTTc > 1:1297004/1‑71 (MQ=34) tACCATTgccagagttgtatcctgtatcagtcctgcaaaatttcacgagtgctttattaactggatgcgtg > 1:864575‑M2/1‑7 (MQ=255) aCCATTgccagagttgtatcctgtatcagtcctgcaaaatttcacgagtgctttattaactggatgcgtga > 1:5024969‑M2/1‑6 (MQ=255) aCCATTgccagagttgtatcctgtatcagtcctgcaaaatttcacgagtgctttattaactggatgcgtga < 1:1755585‑M2/71‑66 (MQ=255) aCCATTgccagagttgtatcctgtatcagtcctgcaaaa > 1:2715266‑M2/1‑6 (MQ=255) aCCATTgccagagttgtatcctgtatcagtcctgcaaaa > 1:4385679‑M2/1‑6 (MQ=255) aCCATTgccagagttgtatcctgtaacagtcctgcaaaa > 1:6318670‑M2/1‑6 (MQ=255) ccATTgccagagttgtatcctgtatcagtcctgcaaaatttcacgagtgctttattaactggatgcgtga > 1:478348‑M2/1‑5 (MQ=255) ccATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCTATATCTTccc > 1:7368949/1‑70 (MQ=35) ccATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCTATATCTTCCCa < 1:5972500/71‑1 (MQ=34) cATTgccagagttgtatcctgtatcagtcctgcaaaatttcacgagtgctttattaactggatgcgtgact > 1:5253089‑M2/1‑4 (MQ=255) cATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCtata < 1:2239977/62‑1 (MQ=35) cATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCtat < 1:3180950/61‑1 (MQ=35) aTTgccagagttgtatcctgtatcagtcctgcaaaatttca < 1:2030848‑M2/41‑39 (MQ=255) aTTgccagagttgtatcctgtatcagtcctgcaaaatttca < 1:4494471‑M2/41‑39 (MQ=255) aTTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCTATATCTTCCCAAc > 1:3160728/1‑71 (MQ=34) ttgccagagttgtatcctgtatcagtcctgcaaaatttcacgagtgctttattaactggatgcgt < 1:5048344‑M2/65‑64 (MQ=255) ttgccagagttgtatcctgtatcagtcctgcaaaatttcacgagtgctttattaactggatgcgt < 1:2478385‑M2/65‑64 (MQ=255) ttgccagagttgtatcctgtatcagtcctgcaaaatttcacgagtgctttattaact > 1:6832014‑M2/1‑2 (MQ=255) ttgccagagttgtatcctgtatcagtcctgcaaaatttcacgagtgctttattaact > 1:7410632‑M2/1‑2 (MQ=255) ttgccagagttgtatcctgtatcagtcctgcaaaatttcacgagtgctttattaact > 1:4223275‑M2/1‑2 (MQ=255) ttgccagagttgtatcctgtatcagtcctgcaaaatttcacgagtgc > 1:5911890‑M2/1‑2 (MQ=255) ttgccagagttgtatcctgtatcagtcctgcaaaatttca > 1:6760384‑M2/1‑2 (MQ=255) ttgccagagttgtatcctgtatcagtcctgcaaaatttca > 1:3767346‑M2/1‑2 (MQ=255) ttgccagagttgtatcctgtatcagtcctgcaaaa < 1:3659450‑M2/35‑34 (MQ=255) ttgccagagttgtatcctgtatcagtcctgcaaaa < 1:1876099‑M2/35‑34 (MQ=255) tttCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCTATATCTTCCCAACCt > 1:2305735/1‑71 (MQ=34) tgccagagttgtatcctgtatcagtcctgcaaaatttcacga < 1:2309219‑M2/42‑42 (MQ=255) tgccagagttgtatcctgtatcagtcctgcaaaatttcacga < 1:976238‑M2/42‑42 (MQ=255) tgccagagttgtatcctgtatcagtcctgcaaaatttc < 1:5719558‑M2/38‑38 (MQ=255) | ACTCGTGAAATTTTGCAGGACTGATACAGGATACAACTCTGGCAATGGTATCGTGAACAGGAATACCATTTTCAAAATCACCATATTGCTTCAAAAAATCGAGATGTGTTTCCCCAAAATCCTCTATATCTTCCCAACCT > W3110S.gb/4015775‑4015914 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |