| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2018583 | 3 (0.040) | 75 (0.960) | 45/94 | NT | 96.3% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
Only 100 of 107 total aligned reads displayed.
CAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2018515‑2018583‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCC < W3110S.gb/2521059‑2520991 CAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCAT < 1:6250519/71‑1CAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCA > 1:4492124/1‑70CAACGTGTGGATGATATGCTCGGCGATACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCA < 1:4900312/70‑1 AACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATA < 1:1381581/71‑1 AACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATA < 1:3174432/71‑1 ACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCAT > 1:3829268/1‑69 GTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGC < 1:1089225/71‑1 GTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGC > 1:6249031/1‑71 TGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCG < 1:2378278/71‑1 TGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAG < 1:793414/69‑1 TGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACT > 1:4063936/1‑71 TGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACT > 1:7511679/1‑71 GATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCT < 1:1377416/66‑1 TATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAA < 1:5432825/71‑1 TATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTT > 1:1080958/1‑69 GCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAA > 1:4543073/1‑68 GCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAA > 1:4552636/1‑68 TCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTT > 1:5225148/1‑71 GGCTCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTG > 1:2361907/1‑70 GGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTG < 1:5959265/70‑1 CTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATGCCACCATAAGCGCTAACTTAAGGGTTAAACCA > 1:7351016/1‑71 TACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCAT > 1:1594935/1‑71 ACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATC > 1:4814836/1‑71 CTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAATCGCTAACTTAAGGGTTGAACCATCT < 1:6593816/70‑1 CTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCT < 1:380832/70‑1 TTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCT > 1:3456133/1‑69 TTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCT > 1:3400833/1‑69 TAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGA > 1:6145693/1‑70 AAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTG > 1:7156927/1‑68 GTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAG < 1:4652100/52‑1 TGCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGA > 1:2584044/1‑67 GCATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGC < 1:3858270/70‑1 GCATGGCTGGCGCTTGCGGGGAGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGC < 1:1587301/70‑1 CATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCG < 1:7474622/70‑1 ATGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGC < 1:6883042/68‑1 TGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACG > 1:1511363/1‑71 TGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACG > 1:2978738/1‑71 TGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACG > 1:6823202/1‑71 TGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGAC > 1:2564656/1‑70 TGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGA < 1:6762539/60‑1 TGGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTT < 1:7510967/49‑1 GGCTGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGC > 1:4895870/1‑71 TGGCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTC > 1:6904333/1‑71 GCGCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTC < 1:39377/69‑1 GCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTG > 1:1538145/1‑71 GCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTG > 1:882151/1‑71 GCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAA < 1:2573983/56‑1 GCTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAA < 1:7254078/56‑1 CTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGC > 1:6783778/1‑71 CTTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCC < 1:1803425/64‑1 TTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCC > 1:5423291/1‑71 TTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATG > 1:3083515/1‑56 TTGCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATG > 1:3453938/1‑56 TTGCGGGGCGATCCAACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAAT > 1:5326048/1‑55 TGCGGGGCGATCCCCCCATAAGCGCTAACTTAAGGGTTGCACCATCTGAAGAATGCGACGCCTCGGTGCCT > 1:6721804/1‑71 gtGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTC > 1:4353232/3‑71 GCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTC > 1:7611308/1‑71 GCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTC > 1:6153655/1‑71 GCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTC > 1:6156214/1‑71 GCGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCT > 1:5972279/1‑70 CGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAA > 1:3721430/1‑48 CGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAA > 1:5947129/1‑48 CGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAA > 1:6171396/1‑48 CGGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTG > 1:5643183/1‑46 GGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGT > 1:2671409/1‑71 GGGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGT > 1:1315117/1‑71 GGGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACCCCTCGGTGCCTCGTT < 1:1363880/71‑1 GGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACC < 1:976319/38‑1 GGCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACC < 1:6772862/38‑1 GCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAA < 1:7573694/71‑1 GCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGAC > 1:4635299/1‑53 GCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGAC > 1:2382156/1‑53 GCGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCA < 1:631600/38‑1 CGATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAA < 1:2171789/70‑1 GATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGA > 1:3409082/1‑71 ATCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGAC < 1:2881487/71‑1 TCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACG < 1:2201022/71‑1 TCCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGAC > 1:3641838/1‑70 CCCACCATAAGCGCTAACTTAAGGGTTGAAGCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGA > 1:1635557/1‑71 CCCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGA > 1:845122/1‑71 CCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGAT > 1:3332459/1‑71 CCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGAT > 1:1953564/1‑71 CCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGAT > 1:2204556/1‑71 CCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGAT < 1:695318/71‑1 CCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGAT > 1:7009866/1‑71 CCACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGA < 1:3884425/70‑1 ACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGC > 1:782035/1‑71 ACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGA > 1:4781960/1‑44 ACCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGA > 1:4791262/1‑44 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCC < 1:4311027/71‑1 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCC < 1:4039095/71‑1 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCC < 1:1459745/71‑1 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCC > 1:1635385/1‑71 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAA > 1:7452477/1‑62 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGT < 1:7778873/59‑1 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCC > 1:778034/1‑55 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAA < 1:669031/35‑1 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAA < 1:855523/35‑1 CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAA < 1:4795742/35‑1 CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCT > 1:4273294/1‑55 CAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/2018515‑2018583‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCC < W3110S.gb/2521059‑2520991 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |