New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	W3110S.gb	= 2018583	3 (0.040)	75 (0.960)	45/94	NT	96.3%	coding (579/687 nt)	fliH	flagellar biosynthesis protein
	?	W3110S.gb	= 2521059	NA (NA)					intergenic (+170/+30)	insL/yfeA	predicted transposase/predicted diguanylate cyclase

GTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCA  >  W3110S.gb/2520997‑2521120                                                               |                                                              gTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATaa                                                        <  1:716984/70‑1 (MQ=33)   cTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTc                                                     >  1:7416954/1‑71 (MQ=38)        cGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCgg                                                <  1:561075/71‑1 (MQ=40)           ggCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttt                                             <  1:2367008/71‑1 (MQ=255)              aCCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGtttttt                                          <  1:5665597/71‑1 (MQ=255)              aCCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGtttttt                                          <  1:2458563/71‑1 (MQ=255)              aCCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGtttttt                                          <  1:2215213/71‑1 (MQ=255)                cGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTa                                        >  1:2641518/1‑71 (MQ=255)                    gCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGcc                                    <  1:313649/71‑1 (MQ=255)                        cGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTa                                        >  1:411954/1‑63 (MQ=255)                          cATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTaa                              <  1:2198635/71‑1 (MQ=255)                           aTTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGGTTTTTTACGCCTGTTAAt                             <  1:2426727/71‑1 (MQ=255)                            ttcttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGtttttt                                          >  1:6859132/1‑57 (MQ=255)                            ttcttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATc                            <  1:1208055/71‑1 (MQ=255)                            ttcttcAGATGGTTCAACCCTTAAGGTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTg                                  <  1:1865089/65‑1 (MQ=255)                             tcttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATc                            <  1:3852801/70‑1 (MQ=255)                              cttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCa                           <  1:2200102/70‑1 (MQ=255)                              cttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCa                           <  1:5835551/70‑1 (MQ=255)                               ttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGc                         >  1:4054464/1‑71 (MQ=255)                                  aGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTa                       <  1:2677716/70‑1 (MQ=255)                                   gATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAAt                     <  1:937614/71‑1 (MQ=255)                                    aTGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCt                        >  1:1867471/1‑67 (MQ=255)                                    aTGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCt                        >  1:5032340/1‑67 (MQ=255)                                    aTGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATg                    >  1:972015/1‑71 (MQ=255)                                        ttCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTg                <  1:5216563/71‑1 (MQ=255)                                        ttCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTg                <  1:6058764/71‑1 (MQ=255)                                          cAACCCTTAAGTTAGCGCTTATGGGATAATT‑CGCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGc               <  1:6432868/69‑1 (MQ=37)                                           aaCCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCgg             >  1:7302611/1‑71 (MQ=255)                                           aaCCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCg              <  1:4125203/70‑1 (MQ=255)                                            aCCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttttt                                           >  1:5069693/1‑40 (MQ=255)                                            aCCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGttttt                                           >  1:1419246/1‑40 (MQ=255)                                                ttAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGc                                     >  1:4213588/1‑42 (MQ=255)                                                 tAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGa         >  1:1116736/1‑69 (MQ=255)                                                    gTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCa                           <  1:7397480/48‑1 (MQ=255)                                                     ttAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATc   <  1:6423634/71‑1 (MQ=255)                                                       aGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCa  >  1:1400021/1‑70 (MQ=255)                                                               |                                                              GTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGATAATTCCCCGGTTTTTTTACGCCTGTTAATCAGCTAATGGCTGCGGGCGACCAATCA  >  W3110S.gb/2520997‑2521120

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.