| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2018583 | 3 (0.040) | 75 (0.960) | 45/94 | NT | 96.3% | coding (579/687 nt) | fliH | flagellar biosynthesis protein |
| ? | W3110S.gb | = 2521059 | NA (NA) | intergenic (+170/+30) | insL/yfeA | predicted transposase/predicted diguanylate cyclase | |||||
Only 100 of 174 total aligned reads displayed.
TGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGG > W3110S.gb/2018513‑2018652 | tcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCAcc < 1:3642889‑M1/13‑1 (MQ=255)tcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCAcc < 1:5800377‑M1/13‑1 (MQ=255) catcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCAcc > 1:7710918‑M1/58‑70 (MQ=255) cAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCat < 1:6250519‑M1/71‑3 (MQ=255) cAACGTGTGGATGATATGCTCGGCGATACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCa < 1:4900312‑M1/70‑2 (MQ=255) atcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCt > 1:5187401‑M1/57‑71 (MQ=255) atcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCt > 1:5372538‑M1/57‑71 (MQ=255) aaCGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCata < 1:3174432‑M1/71‑4 (MQ=255) aaCGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCata < 1:1381581‑M1/71‑4 (MQ=255) aCGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCat > 1:3829268‑M1/1‑67 (MQ=255) ggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCa > 1:1559410‑M1/54‑71 (MQ=255) gtgtGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagc < 1:1089225‑M1/71‑7 (MQ=255) tgtgGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcg < 1:2378278‑M1/71‑8 (MQ=255) tgtgGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataag < 1:793414‑M1/69‑6 (MQ=255) tgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaact > 1:4063936‑M1/1‑58 (MQ=255) tgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaact > 1:7511679‑M1/1‑58 (MQ=255) tcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCa > 1:5094312‑M1/43‑60 (MQ=255) tcatatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCt > 1:5620647‑M1/43‑71 (MQ=255) tatGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaa < 1:5432825‑M1/71‑17 (MQ=255) tatGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaactt > 1:1080958‑M1/1‑55 (MQ=255) tatcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa > 1:5991782‑M1/40‑71 (MQ=255) gCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaa > 1:4552636‑M1/1‑52 (MQ=255) gCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaa > 1:4543073‑M1/1‑52 (MQ=255) atcaggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa < 1:3703223‑M1/32‑1 (MQ=255) tCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggtt > 1:5225148‑M1/1‑50 (MQ=255) ggcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtc > 1:6235550‑M1/35‑71 (MQ=255) gcgtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtct > 1:1375581‑M1/34‑71 (MQ=255) gtaataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTa > 1:4687266‑M1/32‑63 (MQ=255) cTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATGCCACCataagcgctaacttaagggttaaacca > 1:7351016‑M1/1‑44 (MQ=255) tACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccat > 1:1594935‑M1/1‑43 (MQ=255) aataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCAt < 1:2982162‑M1/19‑1 (MQ=255) ataccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtctc < 1:4129629‑M1/39‑1 (MQ=255) taccacaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTccgccg > 1:2400344‑M1/28‑71 (MQ=255) cTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataatcgctaacttaagggttgaaccatct < 1:6593816‑M1/70‑31 (MQ=255) ttAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatct > 1:3456133‑M1/1‑39 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctga > 1:6145693‑M1/1‑38 (MQ=255) tAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:5296184‑M1/1‑38 (MQ=255) ccacaacccttaagttagcgcttatGGGCGATCCCACCCTc > 1:3337140‑M1/26‑41 (MQ=255) aaGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctg > 1:7156927‑M1/1‑37 (MQ=255) acaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATg < 1:3363709‑M1/47‑1 (MQ=255) acaacccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGa > 1:1759341‑M1/24‑71 (MQ=255) cccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATg > 1:810904‑M1/20‑66 (MQ=255) gCATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgc < 1:3858270‑M1/70‑40 (MQ=255) ccttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCg > 1:3322505‑M1/19‑71 (MQ=255) cATGGCTGGCGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcg < 1:7474622‑M1/70‑41 (MQ=255) ttaagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGAt < 1:3807416‑M1/55‑1 (MQ=255) tggctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacg > 1:6823202‑M1/1‑28 (MQ=255) tggctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgac > 1:2564656‑M1/1‑28 (MQ=255) tggctggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctga < 1:6762539‑M1/60‑33 (MQ=255) taagttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGAtc < 1:3146675‑M1/56‑1 (MQ=255) agttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGAtct < 1:6918418‑M1/57‑1 (MQ=255) gttagcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGt > 1:4318062‑M1/13‑48 (MQ=255) tggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctc > 1:7418043‑M1/1‑24 (MQ=255) tggcGCTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctc > 1:6904333‑M1/1‑24 (MQ=255) gcgcTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctc < 1:39377‑M1/69‑48 (MQ=255) agcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtct > 1:4910268‑M1/10‑47 (MQ=255) agcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtct > 1:4406223‑M1/10‑47 (MQ=255) agcgcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGtct > 1:4837300‑M1/10‑47 (MQ=255) gcTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtg > 1:1538145‑M1/1‑20 (MQ=255) gcttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCa > 1:4237543‑M1/7‑71 (MQ=255) cTTGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcc < 1:1803425‑M1/64‑46 (MQ=255) ttGCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatg > 1:3083515‑M1/1‑18 (MQ=255) ttatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAgt < 1:2283748‑M1/67‑1 (MQ=255) tatGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAgtg < 1:5533432‑M1/68‑1 (MQ=255) gtggggcgATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctc > 1:4353232‑M1/3‑16 (MQ=255) gCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctc > 1:7611308‑M1/1‑16 (MQ=255) gCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctc > 1:6156214‑M1/1‑16 (MQ=255) gCGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcct > 1:5972279‑M1/1‑16 (MQ=255) cGGGGCGATCCCACCataagcgctaacttaagggttgaaccatctgaa > 1:5947129‑M1/1‑15 (MQ=255) atGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAgtg > 1:7322124‑M1/3‑70 (MQ=255) tGGTCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTc > 1:2811212‑M1/2‑71 (MQ=255) ggggCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgt > 1:1315117‑M1/1‑14 (MQ=255) ggggCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgt > 1:2671409‑M1/1‑14 (MQ=255) gggCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacccctcggtgcctcgtt < 1:1363880‑M1/71‑59 (MQ=255) ggCGATCCCACCataagcgctaacttaagggttgaacc < 1:6772862‑M1/38‑27 (MQ=255) ggCGATCCCACCataagcgctaacttaagggttgaacc < 1:976319‑M1/38‑27 (MQ=255) gCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaa < 1:7573694‑M1/71‑61 (MQ=255) gCGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgac > 1:4635299‑M1/1‑11 (MQ=255) gCGATCCCACCataagcgctaacttaagggttgaacca < 1:631600‑M1/38‑28 (MQ=255) cGATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaa < 1:2171789‑M1/70‑61 (MQ=255) gATCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaaga > 1:3409082‑M1/1‑9 (MQ=255) aTCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagac < 1:2881487‑M1/71‑64 (MQ=255) tCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacg < 1:2201022‑M1/71‑65 (MQ=255) tCCCACCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagac > 1:3641838‑M1/1‑7 (MQ=255) tCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTc > 1:6177258/1‑71 (MQ=255) tCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTc < 1:4150560/71‑1 (MQ=255) cccACCataagcgctaacttaagggttgaagcatctgaagaatgcgacgcctcggtgcctcgttaagacga > 1:1635557‑M1/1‑6 (MQ=255) ccaccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgat < 1:695318‑M1/71‑67 (MQ=255) ccaccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgat > 1:1953564‑M1/1‑5 (MQ=255) ccACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGc < 1:2067782/71‑1 (MQ=255) cACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCt < 1:2575019/71‑1 (MQ=255) accataagcgctaacttaagggttgaaccatctgaagaatgcga > 1:4781960‑M1/1‑3 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc < 1:4311027‑M1/71‑70 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcc < 1:1459745‑M1/71‑70 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcc > 1:778034‑M1/1‑2 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaa < 1:6324067‑M1/35‑34 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaa < 1:855523‑M1/35‑34 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaa < 1:669031‑M1/35‑34 (MQ=255) ccataagcgctaacttaagggttgaaccatctgaa < 1:4795742‑M1/35‑34 (MQ=255) cataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcct > 1:4273294‑M1/1‑1 (MQ=255) | TGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGG > W3110S.gb/2018513‑2018652 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |