New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb 2172308 =NA (NA)127 (1.590) 63/96 NT 100% pseudogene (1563/2041 nt) gatR DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
?W3110S.gb = 3920281 0 (0.000)coding (88/213 nt) cspA major cold shock protein

Only 100 of 188 total aligned reads displayed.

GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/2172377‑2172308
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCTT  <  W3110S.gb/3920281‑3920211
                                                                                                                                             
GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG                                                                        >  1:4294145/1‑71
 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT                                                                       >  1:1923336/1‑71
 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGT                                                                       <  1:6032516/71‑1
 TCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG                                                                        <  1:4091205/70‑1
   ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGa                                                                     >  1:1725093/1‑70
   ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT                                                                     <  1:5677965/71‑1
   ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT                                                                     <  1:2986130/71‑1
   ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTG                                                                      >  1:2882049/1‑70
   ATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGACCACTATTGCTGGGTAAGATCAGT                                                                       >  1:7379751/1‑69
    TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGat                                                                    <  1:6907308/71‑3
    TGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT                                                                     >  1:6933113/1‑70
     GTGAGTAAACTCTCAGTCAGAGGTGACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTC                                                                   >  1:3835092/1‑71
      TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG                                                                  <  1:3032375/71‑1
      TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG                                                                  <  1:2412195/71‑1
      TGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTT                                                                    <  1:2970197/69‑1
        AGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA                                                                <  1:3123740/71‑1
           CACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACAC                                                             >  1:3253978/1‑71
           CACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACAC                                                             >  1:3668936/1‑71
              CTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTC                                                          >  1:4218881/1‑71
               TCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG                                                                        <  1:5010601/56‑1
                 TGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCT                                                       >  1:1001373/1‑71
                  GACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTG                                                      >  1:4862894/1‑71
                  GACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTG                                                      >  1:1264460/1‑71
                    CTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGC                                                     >  1:790524/1‑70
                     TGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTA                                                   >  1:7443915/1‑71
                      GAGAGTATACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTAT                                                  >  1:1871/1‑71
                       AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATC                                                 >  1:3949879/1‑71
                       AGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTA                                                                <  1:4133870/56‑1
                        GAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTT                                                           >  1:3654969/1‑60
                          GTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATC                                                 >  1:5911269/1‑68
                           TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAG                                              <  1:750361/70‑1
                           TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG                                                                  >  1:950302/1‑50
                           TTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG                                                                  >  1:2270662/1‑50
                             TACTCACTTAGCCGCGTGTCCTCTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC                                           >  1:5160332/1‑71
                             TACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC                                           >  1:6778202/1‑71
                               CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGA                                         <  1:1103656/71‑1
                               CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGT                                                                 <  1:5246053/47‑1
                               CTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGT                                                                 <  1:7682086/47‑1
                                 CACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATG                                       >  1:1245474/1‑71
                                 CACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT                                                                     >  1:2223036/1‑41
                                 CACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGT                                                                     >  1:4729660/1‑41
                                 CACTTAGCCGCGTGTCCACTAATGCTGGGTAAGATCAGTG                                                                      >  1:6916137/1‑40
                                  ACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGG                                      >  1:4009480/1‑71
                                   CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGT                                     <  1:7104193/71‑1
                                   CTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGT                                     <  1:7094762/71‑1
                                    TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC                                           >  1:7349254/1‑64
                                    TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC                                           >  1:4328199/1‑64
                                    TTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAG                                                                        <  1:454507/35‑1
                                      AGCCGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCG                                                                  <  1:5954822/39‑1
                                         CGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAA                               >  1:7658088/1‑71
                                         CGCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTT                                    <  1:3479225/66‑1
                                          GCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC                                           <  1:7529610/58‑1
                                          GCGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC                                           <  1:4847342/58‑1
                                           CGTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATC                             <  1:5445546/71‑1
                                            GTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCT                            <  1:983031/71‑1
                                            GTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCT                            <  1:1700774/71‑1
                                            GTGTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAA                                >  1:4532032/1‑67
                                            GTGTCAACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCT                            <  1:7632583/71‑1
                                              GTCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTT                                    >  1:5575578/1‑61
                                               TCCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTT                                    <  1:6881740/60‑1
                                                CCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTG                         >  1:4348512/1‑70
                                                CCACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTG                         >  1:6429160/1‑70
                                                 CACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGG                        <  1:318608/70‑1
                                                 CACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACA                                 <  1:7277717/61‑1
                                                 CACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTC                                                        <  1:70767/38‑1
                                                  ACTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACA                                 <  1:3174435/60‑1
                                                   CTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACG                     <  1:4988096/71‑1
                                                   CTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTC                           <  1:842187/65‑1
                                                   CTATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGG                                      <  1:4878190/54‑1
                                                    TATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACG                     >  1:1288211/1‑70
                                                    TATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAA                               >  1:1984504/1‑60
                                                     ATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACG                     >  1:4114783/1‑69
                                                     ATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGA                       >  1:3060849/1‑67
                                                     ATTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGAT                                        <  1:1037637/50‑1
                                                      TTGCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGA                    <  1:6226279/69‑1
                                                        GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGG                 <  1:3600831/70‑1
                                                        GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAA                                            >  1:4147377/1‑43
                                                        GCTGGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAA                                            >  1:1888986/1‑43
                                                           GGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATC                             <  1:2155909/55‑1
                                                           GGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC                                           <  1:2536469/41‑1
                                                           GGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC                                           <  1:7488533/41‑1
                                                           GGGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAAC                                           <  1:2357407/41‑1
                                                            GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAG             <  1:550326/70‑1
                                                            GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAG             <  1:2219018/70‑1
                                                            GGTAAGATCAGTGTTCGTACACTTCTCTGCTATCC                                                <  1:1000759/35‑1
                                                             GTAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGAT                                        >  1:6147433/1‑42
                                                              TAAGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTG                         >  1:1923882/1‑56
                                                                AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGT        <  1:7242698/71‑1
                                                                AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGT        <  1:5355611/71‑1
                                                                AGATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGT        <  1:113016/71‑1
                                                                 GATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTG       <  1:1729211/71‑1
                                                                 GATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTG       <  1:4819745/71‑1
                                                                 GATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGA                    <  1:6186319/58‑1
                                                                  ATCAGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGT      <  1:447091/71‑1
                                                                  ATCACTGTTCGTACACTTCTCTGCTATCCAGAACGA                                         <  1:4248173/36‑1
                                                                   TCAGTGTTCGTACACTTCTCTGCTATCCAGAACGA                                         <  1:4768503/35‑1
                                                                     AGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCT   <  1:1179271/71‑1
                                                                     AGTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCC    <  1:1331992/70‑1
                                                                      GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCTT  >  1:2648595/1‑71
                                                                      GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCTT  <  1:2650554/71‑1
                                                                                                                                             
GTCATGTGAGTCACCTCTGACTGAGAGTTTACTCACTTAGCCGCGTGTCCACTATTGCTGGGTAAGATCAg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  W3110S.gb/2172377‑2172308
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTGTTCGTACACTTCTCTGCTATCCAGAACGATGGTTACAAATCTCTGGACGAAGGTCAGAAAGTGTCCTT  <  W3110S.gb/3920281‑3920211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.