| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 127 (1.590) | 63/96 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 105 total aligned reads displayed.
TATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCA > W3110S.gb/2172240‑2172371 | tatTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCt < 1:5247006/69‑1 (MQ=255)tatTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGa < 1:3669505/71‑1 (MQ=255) atTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGAt > 1:5368384/1‑71 (MQ=255) tttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGAt > 1:7463802/1‑68 (MQ=255) ttGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCtt < 1:221576/70‑1 (MQ=255) ggCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAcc > 1:5159957/1‑71 (MQ=255) ggCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTAcc > 1:1689733/1‑71 (MQ=255) cGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCa < 1:6656065/71‑1 (MQ=255) gTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAg > 1:6101562/1‑70 (MQ=255) tCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg > 1:6507515/1‑58 (MQ=255) cATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCt > 1:7334297/1‑56 (MQ=255) cATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTg > 1:2698590/1‑57 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:7372690/70‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:6477991/70‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:4313112/70‑1 (MQ=255) aTTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:6468629/70‑1 (MQ=255) ttAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa < 1:4130768/71‑1 (MQ=255) aaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCaa < 1:3812209/67‑1 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAg < 1:3427018/69‑1 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGt < 1:1943565/70‑1 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg < 1:657512/71‑1 (MQ=255) aTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg > 1:7113104/1‑71 (MQ=255) tCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTgg < 1:1045342/71‑1 (MQ=255) ccTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGt > 1:4594670/1‑68 (MQ=255) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGac < 1:7365909/71‑1 (MQ=255) tCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGacac > 1:5893319/1‑71 (MQ=255) gATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGc < 1:3305511/71‑1 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGt > 1:6850380/1‑59 (MQ=255) aTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:1188321/71‑1 (MQ=255) tAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGa > 1:6485353/1‑41 (MQ=255) tAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg > 1:78816/1‑59 (MQ=255) tAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg > 1:4043740/1‑59 (MQ=255) tAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTa < 1:1547999/71‑1 (MQ=255) tAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTa < 1:27811/71‑1 (MQ=255) aaGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACAcgcg > 1:6643858/1‑66 (MQ=255) aGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt > 1:2911002/1‑68 (MQ=255) cATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTg < 1:2193936/71‑1 (MQ=255) aTTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATc < 1:3083398/38‑1 (MQ=255) aTTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATc < 1:5945118/38‑1 (MQ=255) aTTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATc < 1:5029518/38‑1 (MQ=255) aTTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACAcgc > 1:7713401/1‑61 (MQ=255) aTTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACAcgc > 1:1246792/1‑61 (MQ=255) aTTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACAcg > 1:258518/1‑60 (MQ=255) ttGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATc < 1:1370345/37‑1 (MQ=255) ttGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAg < 1:4265918/45‑1 (MQ=255) ttGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg > 1:7475776/1‑71 (MQ=255) ttGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAg < 1:6326381/71‑1 (MQ=255) tGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAAt < 1:1381088/48‑1 (MQ=255) cGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCa > 1:7526746/1‑40 (MQ=255) cGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACAcgc > 1:5487032/1‑56 (MQ=255) cGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACAcgc > 1:7539105/1‑56 (MQ=255) cGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACAcgc > 1:514588/1‑56 (MQ=255) cGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACAcgc > 1:655060/1‑56 (MQ=255) cGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACAcgc > 1:2511365/1‑56 (MQ=255) cGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa > 1:7574141/1‑71 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa > 1:5080023/1‑64 (MQ=255) tACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa > 1:319984/1‑64 (MQ=255) aCTTCCGCTGTCGAGAATAACGGTCTGATCTTAcc < 1:7405014/35‑1 (MQ=255) aCTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAct > 1:5992304/1‑70 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:6560649/1‑58 (MQ=255) cTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc < 1:6693596/70‑1 (MQ=255) ttCCGCTGTCGAGAATAACGGTCTGATCTTACCCa > 1:4940818/1‑35 (MQ=255) ttCCGCTGTCGAGAATAACGGTCTGATCTTACCCa > 1:2602471/1‑35 (MQ=255) ttCCGCTGTCGAGAATAACGGTCTGATCTTACCCa > 1:6425558/1‑35 (MQ=255) tCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActc > 1:3167123/1‑68 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGt > 1:7462351/1‑41 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGt > 1:4889934/1‑41 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg < 1:1033752/42‑1 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg < 1:5338333/42‑1 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTg < 1:4794254/42‑1 (MQ=255) ccGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc < 1:2709822/69‑1 (MQ=255) cGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa > 1:3208785/1‑38 (MQ=255) cGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATa > 1:6177543/1‑38 (MQ=255) cGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc > 1:5589090/1‑68 (MQ=255) cGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACtctc > 1:3198899/1‑68 (MQ=255) gCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcact > 1:3797724/1‑68 (MQ=255) tGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:2330248/1‑68 (MQ=255) tGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt > 1:1267650/1‑68 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:6700510/47‑1 (MQ=255) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:4176684/47‑1 (MQ=255) cGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:7077373/1‑50 (MQ=255) cGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt > 1:2485300/1‑50 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg < 1:138373/70‑1 (MQ=255) gagaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGt > 1:148031/1‑71 (MQ=255) gaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa > 1:3758466/1‑71 (MQ=255) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:63467/42‑1 (MQ=255) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:1586070/42‑1 (MQ=255) aaCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:1233106/39‑1 (MQ=255) aaCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:1019428/39‑1 (MQ=255) aaCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTa < 1:7793048/40‑1 (MQ=255) aaCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTa < 1:7442557/40‑1 (MQ=255) aaCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTa < 1:21814/40‑1 (MQ=255) aaCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtc > 1:212240/1‑59 (MQ=40) aaCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtc > 1:647702/1‑59 (MQ=40) aaCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 1:6884982/1‑71 (MQ=38) aCGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCt < 1:175849/38‑1 (MQ=255) cGGTCTGATGTTACCCAGCAATAGTGGACACGCGGCTaa > 1:6212565/1‑39 (MQ=255) cGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa > 1:7580092/1‑39 (MQ=40) gTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt < 1:5523111/43‑1 (MQ=32) gTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt < 1:7447144/43‑1 (MQ=32) | TATTTTTGGCGGTCATTAATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCA > W3110S.gb/2172240‑2172371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |