| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | 2172308 = | NA (NA) | 127 (1.590) | 63/96 | NT | 100% | pseudogene (1563/2041 nt) | gatR | DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 |
| ? | W3110S.gb | = 3920281 | 0 (0.000) | coding (88/213 nt) | cspA | major cold shock protein | |||||
Only 100 of 344 total aligned reads displayed.
AAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACC > W3110S.gb/3920211‑3920350 | aaGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC > 1:2648595‑M2/1‑71 (MQ=255)aaGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACAC > 1:4247784‑M2/1‑71 (MQ=255) aGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACt < 1:7867646‑M2/71‑2 (MQ=255) agtccggaacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtatgatcacaca > 1:3492413‑M2/66‑70 (MQ=255) acacTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgat < 1:447091‑M2/71‑5 (MQ=255) acTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct < 1:5355611‑M2/71‑7 (MQ=255) cTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatct < 1:7454132‑M2/70‑7 (MQ=255) aacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac < 1:315049‑M2/4‑1 (MQ=255) aacaatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac < 1:1933129‑M2/4‑1 (MQ=255) caatttgaaaacaagaacctcgcttaggcctgtgtccatattacgtgggtaggatcacac < 1:4675071‑M2/4‑1 (MQ=255) cTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:2219018‑M2/70‑11 (MQ=255) aCCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacc > 1:936918‑M2/1‑57 (MQ=255) ccTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc < 1:3600831‑M2/70‑15 (MQ=255) ttCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc > 1:258247‑M2/1‑54 (MQ=255) tCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaa < 1:6226279‑M2/69‑17 (MQ=255) tCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatc < 1:6186319‑M2/58‑6 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatag < 1:4988096‑M2/71‑20 (MQ=255) cGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:1288211‑M2/1‑52 (MQ=255) aacaagaacctcgcttaggcctgtgtccatattacctgggtaggatcACACATCTTTAGAGCCATCGTCAg < 1:3332345‑M2/24‑1 (MQ=255) acaagaacctcgcttaggcctgtgtccatattacgtgtgtaggatcACACATCTTTAGAGCCATCGTCAgg < 1:654038‑M2/25‑1 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga < 1:1878614‑M2/71‑24 (MQ=255) cAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgg > 1:4348512‑M2/1‑48 (MQ=255) agagATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga < 1:4099217‑M2/70‑24 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGt < 1:6150488‑M2/21‑1 (MQ=255) agaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:6646401‑M2/44‑66 (MQ=255) gagaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg < 1:691214‑M2/67‑22 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcacact > 1:7161404‑M2/43‑46 (MQ=255) gaacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCt > 1:4055380‑M2/43‑50 (MQ=255) aacctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtga < 1:4749274‑M2/30‑1 (MQ=255) gaTTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaccca < 1:501033‑M2/56‑13 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtga < 1:801963‑M2/30‑1 (MQ=255) acctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtga < 1:2402013‑M2/30‑1 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatcACACTtcg < 1:5215165‑M2/8‑2 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatg < 1:2940571‑M2/32‑1 (MQ=255) cctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgat > 1:2292871‑M2/40‑70 (MQ=255) tttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:1984504‑M2/1‑42 (MQ=255) tttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaata > 1:5161106‑M2/1‑42 (MQ=255) ctcgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatga < 1:3443232‑M2/33‑1 (MQ=255) ctcgctgaggcctgtgtccatattacgtgggtaggatcACACTTCTTTAGAGCCa > 1:4423344‑M2/39‑55 (MQ=255) ttGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcg < 1:3217903‑M2/70‑30 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcacact < 1:751526‑M2/5‑2 (MQ=255) tcgcttaggcctgtgtccatattacgtgggtaggatcacact < 1:2975777‑M2/5‑2 (MQ=255) tGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtg < 1:7277717‑M2/61‑22 (MQ=255) cgcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTa > 1:5407410‑M2/37‑47 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagc > 1:7213300‑M2/36‑71 (MQ=255) gcttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagc > 1:3097144‑M2/36‑71 (MQ=255) cttaggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagcc < 1:1232531‑M2/37‑1 (MQ=255) aaCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggac > 1:5575578‑M2/1‑37 (MQ=255) aaCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga < 1:6881740‑M2/60‑24 (MQ=255) aCCATCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaag < 1:7104193‑M2/71‑36 (MQ=255) aggcctgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccg < 1:3031375‑M2/38‑1 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtgga < 1:5046567‑M2/56‑24 (MQ=255) aTCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaat < 1:1037637‑M2/50‑18 (MQ=255) tCGTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgag < 1:1103656‑M2/71‑40 (MQ=255) tgtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtgatga > 1:7787615‑M2/27‑59 (MQ=255) gTTCTGGATAGCAGAGAAGTGTACGAACACtgatcttaccc < 1:2357407‑M2/41‑12 (MQ=255) ttCTGGATAGCAGAGAAGTGTACGAACACtgatcttacccagc > 1:4147377‑M2/1‑29 (MQ=255) gtgtccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaa > 1:2111790‑M2/26‑65 (MQ=255) tgtccatattacgtgggtaggatcACACATCTTTag > 1:2145669‑M2/25‑36 (MQ=255) tccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGt > 1:6293047‑M2/23‑70 (MQ=255) ggATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:1000759‑M2/35‑11 (MQ=255) ggATAGCAGAGAAGTGTACGAACACtgatcttacc < 1:172647‑M2/35‑11 (MQ=255) ccatattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGt < 1:6821378‑M2/28‑1 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:3949879‑M2/1‑24 (MQ=255) gATAGCAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaac > 1:5911269‑M2/1‑24 (MQ=255) tattacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCa < 1:2485313‑M2/50‑1 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCa > 1:6036691‑M2/17‑39 (MQ=255) ttacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGtg > 1:4119830‑M2/17‑45 (MQ=255) tacgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGt > 1:6773207‑M2/16‑69 (MQ=255) cAGAGAAGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtc > 1:1264460‑M2/1‑19 (MQ=255) acgtgggtaggatcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTg < 1:3047179‑M2/56‑1 (MQ=255) acgtgggtaggatcACACATCTTTAGAGACATCGTCAGGAGTGATgaa > 1:1440330‑M2/15‑48 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtg < 1:6968561‑M2/38‑22 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtg < 1:1704865‑M2/38‑22 (MQ=255) gagaAGTGTACGAACACtgatcttacccagcaatagtg < 1:70767‑M2/38‑22 (MQ=255) aaGTGTACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactc > 1:1137918‑M2/1‑14 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgac < 1:5443066‑M2/71‑62 (MQ=255) gtACGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtc > 1:3656208‑M2/1‑10 (MQ=255) cGAACACtgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactc > 1:978630‑M2/1‑7 (MQ=255) atcACACATCTTTAGAGCCATCGTCAGGAGTGATgaagccgaagcc < 1:5971359‑M2/43‑1 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:6509637‑M2/3‑71 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:3844034‑M2/3‑71 (MQ=255) tcACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGa > 1:7591840‑M2/3‑71 (MQ=255) cACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCAttt < 1:4303256‑M2/64‑1 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat < 1:5677965‑M2/71‑68 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcaca > 1:6933113‑M2/1‑4 (MQ=255) acactgatcttacccagcaatagtggacacgcggctaagtg > 1:2223036‑M2/1‑4 (MQ=255) acactgatcttacccagcaatagtgcacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:5296142‑M2/1‑4 (MQ=255) cactgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:2882049‑M2/1‑3 (MQ=255) cacaTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAc < 1:2764661/71‑1 (MQ=255) actgatcttacccagcaatagtggtcacgcggctaagtgagtaaactctcagtcagaggtgactcacat > 1:7379751‑M2/1‑2 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatga > 1:1923336‑M2/1‑2 (MQ=255) actgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactcacatg < 1:7674849‑M2/70‑69 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgactc > 1:3742080‑M2/1‑1 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcagaggtgac > 1:7633346‑M2/1‑1 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactctcagtcaga < 1:7497208‑M2/56‑56 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:4840401‑M2/1‑1 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaagtgagtaaactct > 1:4870725‑M2/1‑1 (MQ=255) ctgatcttacccagcaatagtggacacgcggctaa < 1:453853‑M2/35‑35 (MQ=255) caTCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATAc > 1:858486/1‑69 (MQ=255) | AAGGACACTTTCTGACCTTCGTCCAGAGATTTGTAACCATCGTTCTGGATAGCAGAGAAGTGTACGAACACATCTTTAGAGCCATCGTCAGGAGTGATGAAGCCGAAGCCTTTGTCAGCGTTGAACCATTTTACGATACC > W3110S.gb/3920211‑3920350 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |