| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4546548 | 111 (1.360) | 6 (0.080) | 3/86 | NT | 5.8% | intergenic (+307/‑171) | fimB/fimE | tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA |
| ? | W3110S.gb | = 4546572 | 99 (1.390) | intergenic (+331/‑147) | fimB/fimE | tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA | |||||
TTTCTTTATTTTTTAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4546474‑4546548‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaataAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAATAGATTGCAGTGGAT < W3110S.gb/4546572‑4546504 TTTCTTTATTTTTTAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGA < 1:1201902/70‑1 TCTTTATTTTTTAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAA > 1:5250461/1‑70 CTTTATTTTTTAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAA > 1:1258014/1‑70 CTTTATTTTTTAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAA > 1:6509770/1‑70 TTTATTTTTTAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAA > 1:5956062/1‑69 TTTATTTTTTAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAA > 1:1141721/1‑69 TTATTTTTTAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGA < 1:4390195/65‑1 TTTTTTAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAAT < 1:2981449/66‑1 GTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAA < 1:922239/45‑1 CACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATA > 1:5306869/1‑42 CACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATA > 1:4908710/1‑42 CACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAAT < 1:878590/41‑1 CACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAAT < 1:3500836/41‑1 TTATATTGAATCAAATCAATGAAAATAAAATATCACTGATGTGACAACA < 1:7724080/49‑1 TTATATTGAATCAAATCAATGAAAATAAAATATCACTGATGTGACAACA < 1:3038574/49‑1 TTGAATCAAATCAATGAAAATAAAATATCACTGATGTGACAACATCTATT < 1:3978991/50‑1 GAATCAAATCAATGAAAATAAAATATCACTGATGTGACAACATCTATTTT > 1:3673082/1‑50 GAATCAAATCAATGAAAATAAAATATCACTGATGTGACAACATCTATTTT > 1:166744/1‑50 GAATCAAATCAATGAAAATAAAATATCACTGATGTGACAACATCTATTTT > 1:2531724/1‑50 AAAATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAATAGATTGCAGT < 1:5437319/71‑1 AAAATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAATAGATTGCAGT > 1:2274356/1‑71 AAAATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAATAGATTGC < 1:318973/68‑1 AAATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAATAGATTGCAGTG > 1:2821696/1‑71 AAATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAATAGATTGCAGTG < 1:3268031/71‑1 AAATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAATAGATTGCAGTG < 1:3882472/71‑1 AAATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAATAGATT > 1:7069224/1‑65 AAATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAATA > 1:1156249/1‑61 AAATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAATA > 1:1637641/1‑61 AAATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAATA > 1:173410/1‑61 AAATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAA > 1:1383089/1‑51 AAATAAAATATCACTGATGTGACAACATCTATTTTCAT > 1:3470560/1‑38 AATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCA < 1:6974201/49‑1 AATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCA < 1:7654986/49‑1 AATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCA < 1:4594045/49‑1 ATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAATAGATTGCAGTGGA < 1:7667338/71‑1 ATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAATAGATTGCAGTGGA < 1:869341/71‑1 ATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAA > 1:4157332/1‑57 ATAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAA > 1:5051036/1‑57 TAAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAATAGATTGCAGTGGAT < 1:809020/71‑1 TTTCTTTATTTTTTAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > W3110S.gb/4546474‑4546548‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaataAAATATCACTGATGTGACAACATCTATTTTCATTGATTTGATTCAATATAACAATAGATTGCAGTGGAT < W3110S.gb/4546572‑4546504 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |