| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 4546548 | 111 (1.360) | 6 (0.080) | 3/86 | NT | 5.8% | intergenic (+307/‑171) | fimB/fimE | tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA |
| ? | W3110S.gb | = 4546572 | 99 (1.390) | intergenic (+331/‑147) | fimB/fimE | tyrosine recombinase/inversion of on/off regulator of fimA/tyrosine recombinase/inversion of on/off regulator of fimA | |||||
Only 100 of 179 total aligned reads displayed.
ATTTTTTAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCA > W3110S.gb/4546481‑4546616 | aTTTTTTAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGAt > 1:3150531/1‑71 (MQ=255) ttttAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGAtgt > 1:7821895/1‑70 (MQ=255) ttttAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGAtgt < 1:1640456/70‑1 (MQ=255) tttAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGAtgttg > 1:3709744/1‑71 (MQ=255) aGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGAtgttgt < 1:2248808/68‑1 (MQ=255) ggAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGAtg > 1:2027504/1‑57 (MQ=255) ggAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTca > 1:3663229/1‑63 (MQ=255) gAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTcac < 1:6541946/63‑1 (MQ=255) aGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGata < 1:1051776/71‑1 (MQ=255) ttAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGa < 1:4439300/50‑1 (MQ=255) aaTCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCa < 1:6936098/61‑1 (MQ=255) aaTCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCa < 1:7560021/61‑1 (MQ=255) aTCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACAt < 1:6827047/58‑1 (MQ=255) aTCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACAt < 1:7145931/58‑1 (MQ=255) aTCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTta < 1:809020‑M2/71‑3 (MQ=255) tCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAg < 1:6204134/45‑1 (MQ=255) tCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTtat < 1:7667338‑M2/71‑4 (MQ=255) cACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTtattt < 1:3268031‑M2/71‑6 (MQ=255) cACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATA > 1:4908710‑M1/1‑42 (MQ=255) aCTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGAtgt > 1:1448026/1‑46 (MQ=255) aCTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTtatttt > 1:2274356‑M2/1‑65 (MQ=255) aCTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTtatttt < 1:5437319‑M2/71‑7 (MQ=255) cTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAg > 1:647670/1‑41 (MQ=255) gCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTtatttt < 1:318973‑M2/68‑7 (MQ=255) cAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTAttttt < 1:6119267/68‑1 (MQ=255) cAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTAttttt < 1:7920985/68‑1 (MQ=255) cAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTa < 1:244956/71‑1 (MQ=255) aaTCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTtattt > 1:7069224‑M2/1‑60 (MQ=255) tATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTtattt > 1:1637641‑M2/1‑56 (MQ=255) tATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTtattt > 1:1156249‑M2/1‑56 (MQ=255) tATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGata > 1:4706704/1‑71 (MQ=255) aTTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACAt < 1:6074800/44‑1 (MQ=255) ttGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTtat > 1:4157332‑M2/1‑54 (MQ=255) ttGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATAtt > 1:1630545/1‑71 (MQ=255) ttGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATAtt > 1:5086137/1‑71 (MQ=255) gTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGAtatt > 1:7517822/1‑51 (MQ=255) gTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGAtatt > 1:5208134/1‑51 (MQ=255) gTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTg > 1:5271865/1‑60 (MQ=255) gTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATAttt < 1:2230638/70‑1 (MQ=255) gTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATAttt < 1:3586666/70‑1 (MQ=255) gTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATAttt < 1:125762/70‑1 (MQ=255) ttATATTGAATCAAATCAATGAAAATAaaatatcactgatgtgacaaca < 1:3038574‑M1/49‑23 (MQ=255) ttATATTGAATCAAATCAATGAAAATAGATGTTGTca < 1:3931694/37‑1 (MQ=255) ttATATTGAATCAAATCAATGAAAATAGATGTTGTca < 1:3455043/37‑1 (MQ=255) ttATATTGAATCAAATCAATGAAAATAGATGTTGTca < 1:2099352/37‑1 (MQ=255) ttATATTGAATCAAATCAATGAAAATAGATGTTGTca < 1:915474/37‑1 (MQ=255) atatTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAAt < 1:5253343/70‑1 (MQ=255) atatTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATg > 1:606906/1‑71 (MQ=255) atatTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATg > 1:1882632/1‑71 (MQ=255) tatTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATg < 1:6964483/70‑1 (MQ=255) ttGAATCAAATCAATGAAAATAaaatatcactgatgtgacaacatctatt < 1:3978991‑M1/50‑29 (MQ=255) ttGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTtattt > 1:1383089‑M2/1‑46 (MQ=255) ttGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTaa < 1:4404302/71‑1 (MQ=255) tGAATCAAATCAATGAAAATAGATGTTGTCACATCAGt > 1:5458991/1‑38 (MQ=255) tGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTtatt < 1:4594045‑M2/49‑5 (MQ=255) tGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTtatt < 1:6974201‑M2/49‑5 (MQ=255) tGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTtatt < 1:7654986‑M2/49‑5 (MQ=255) tGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAAt > 1:5242367/1‑71 (MQ=255) tGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAAt > 1:5307213/1‑71 (MQ=255) tGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAAt > 1:1574214/1‑71 (MQ=255) gAATCAAATCAATGAAAATAaaatatcactgatgtgacaacatctatttt > 1:2531724‑M1/1‑20 (MQ=255) gAATCAAATCAATGAAAATAaaatatcactgatgtgacaacatctatttt > 1:3673082‑M1/1‑20 (MQ=255) gAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGa < 1:7615612/57‑1 (MQ=255) gAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAAtt > 1:5189229/1‑71 (MQ=255) gAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAAtt > 1:5364000/1‑71 (MQ=255) gAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAAtt > 1:3211503/1‑71 (MQ=255) aatcaaatcaATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTaa > 1:2895924/1‑68 (MQ=255) aatcaaatcaATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAAtt < 1:2368493/70‑1 (MQ=255) atcaaatcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGa > 1:7722894/1‑55 (MQ=255) atcaaatcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGa > 1:4047309/1‑55 (MQ=255) atcaaatcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGa > 1:3502086/1‑55 (MQ=255) atcaaatcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGa > 1:6856595/1‑55 (MQ=255) atcaaatcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGa < 1:6074968/71‑1 (MQ=255) atcaaatcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGa > 1:5837707/1‑71 (MQ=255) atcaaatcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGa < 1:3399960/71‑1 (MQ=255) aaatcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACt < 1:1761217/70‑1 (MQ=255) aaatcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACt < 1:5428856/70‑1 (MQ=255) aaatcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACt > 1:5778075/1‑70 (MQ=255) atcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGAt < 1:4153785/71‑1 (MQ=255) tcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTAttttt > 1:4592949/1‑43 (MQ=255) tcaaTGAAAATAGATGTTGTCACATCAGTGATATTTTAttttt > 1:7840595/1‑43 (MQ=255) aaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTAt < 1:677957/45‑1 (MQ=255) aaTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTAt < 1:5951281/45‑1 (MQ=255) aTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTa < 1:200909/57‑1 (MQ=255) aTGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGcc < 1:6404347/71‑1 (MQ=255) gAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGat < 1:2193224/45‑1 (MQ=255) aaaaTAGATGTTGTCACATCAGTGATATTTtattttcattgatttgattc > 1:166744‑M2/1‑30 (MQ=255) aaaaTAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAAtt < 1:6066704/57‑1 (MQ=255) aaaaTAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCcaca > 1:2573426/1‑71 (MQ=255) aaataaaatatcactgatgtgacaacatctattttcattgatttgattcaatataacaatagattgcagtg > 1:2821696‑M1/1‑5 (MQ=255) aaataaaatatcactgatgtgacaacatctattttcattgatttgattcaatataacaatagattgcagtg < 1:3882472‑M1/71‑67 (MQ=255) aaataaaatatcactgatgtgacaacatctattttcattgatttgattcaatataacaata > 1:173410‑M1/1‑5 (MQ=255) aaataaaatatcactgatgtgacaacatctattttcattgatttgattcaa > 1:1383089‑M1/1‑5 (MQ=255) aaataaaatatcactgatgtgacaacatctattttcat > 1:3470560‑M1/1‑5 (MQ=255) aaaTAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGatat > 1:1123475/1‑45 (MQ=255) aaaTAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACAt < 1:6704958/71‑1 (MQ=255) aataaaatatcactgatgtgacaacatctattttcattgatttgattca < 1:7654986‑M1/49‑46 (MQ=255) ataaaatatcactgatgtgacaacatctattttcattgatttgattcaatataacaatagattgcagtgga < 1:869341‑M1/71‑69 (MQ=255) ataaaatatcactgatgtgacaacatctattttcattgatttgattcaatataacaa > 1:5051036‑M1/1‑3 (MQ=255) tAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTaa < 1:4850653/46‑1 (MQ=255) | ATTTTTTAAGCAACTGGAAGTTAATCCACTGCAATCTATTGTTATATTGAATCAAATCAATGAAAATAGATGTTGTCACATCAGTGATATTTTATTTTTGTATGATATTTAATGTAATTGACTGATAGCCACATCA > W3110S.gb/4546481‑4546616 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |