New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 2173565NA (NA)59 (1.180) 43/102 NT 98.3% pseudogene (306/2041 nt)
pseudogene (306/339 nt)
gatR
gatR
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090
?W3110S.gb = 3932933 1 (0.020)coding (222/1608 nt) dppA dipeptide transporter

GGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2173505‑2173565
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGGTG  <  W3110S.gb/3932933‑3932864
                                                                                                                                   
GGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTG                                                              <  1:842586/71‑1
 GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGG                                                             <  1:2721419/71‑1
 GAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGG                                                             <  1:739234/71‑1
  AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGT                                                            >  1:2482495/1‑71
  AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGT                                                            >  1:2235676/1‑71
   ACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTG                                                           <  1:437444/71‑1
      ATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCG                                                        <  1:4605177/71‑1
       TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGA                                                       >  1:2962431/1‑71
       TTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGA                                                       >  1:2396078/1‑71
        TTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGAT                                                      >  1:2228846/1‑71
         TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATT                                                     >  1:2373856/1‑71
         TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATT                                                     >  1:2247197/1‑71
           AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTT                                                   <  1:1812044/71‑1
           AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTT                                                    <  1:1366309/70‑1
             AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAA                                                 <  1:3933520/71‑1
             AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATT                                                     <  1:2969231/67‑1
               CAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAAT                                               >  1:1584695/1‑71
                AAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATT                                              >  1:3260976/1‑71
                  GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCA                                            <  1:2352470/71‑1
                  GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTC                                             >  1:2488329/1‑70
                    ACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAA                                           <  1:4578775/70‑1
                     CCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGG                                                             <  1:3179806/51‑1
                      CTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCTATTTTAAATTCAACCA                                        <  1:4488083/71‑1
                       TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAAC                                          >  1:1075215/1‑68
                        CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATT                                                     >  1:4555267/1‑56
                         GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGAC                                     >  1:236141/1‑71
                         GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGAC                                     >  1:4068011/1‑71
                         GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAG                                       <  1:3595792/69‑1
                         GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTCCCGATTTTAAATTCAACCAGA                                      <  1:3317048/70‑1
                          CTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCA                                            <  1:2817078/63‑1
                          CTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTC                                             <  1:2057123/62‑1
                          CTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTC                                             >  1:2969860/1‑62
                          CTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTG                                                              <  1:3829913/45‑1
                          CTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTG                                                              <  1:3942725/45‑1
                               GCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTG                                                           >  1:1189534/1‑43
                                CCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTAT                               <  1:610455/70‑1
                                 CTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATA                              >  1:3962326/1‑70
                                  TGTGTCCATATTACGTGGGTAGGATCACACTTAGGTGGTGCCGATTTTAAATTCAACCAGAC                                     <  1:4421864/62‑1
                                   GTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAA                            >  1:1036184/1‑70
                                    TGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGC                          >  1:1120597/1‑71
                                    TGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGC                          >  1:1715657/1‑71
                                    TGTCCATATTACGTGGGTAGGATCACACTTCGGTGG                                                             >  1:2799827/1‑36
                                     GTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTC                                             <  1:2130573/51‑1
                                      TCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGG                        <  1:1022710/71‑1
                                      TCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTAAACCAG                                       <  1:600439/56‑1
                                          TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTT                                                   <  1:4466201/40‑1
                                          TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTT                                                   <  1:1576023/40‑1
                                            TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG                   <  1:2764816/70‑1
                                             TACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAG                           <  1:3538307/61‑1
                                              ACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG                   >  1:834504/1‑68
                                                GTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAG              >  1:2843682/1‑71
                                                GTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGA               <  1:1546727/70‑1
                                                GTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGGTATAAAGCGGGACGGAAGAG              >  1:128850/1‑71
                                                    GTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGC                          <  1:2875212/55‑1
                                                     TAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGG                                   <  1:1966833/45‑1
                                                      AGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACG                    >  1:2588042/1‑59
                                                       GGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCA        <  1:1121173/70‑1
                                                       GGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAA                 <  1:236785/61‑1
                                                       GGATCACACTTCGGTGGTGCCGATTTTAAATTCAA                                           >  1:2764052/1‑35
                                                         ATCACACTTCGGTGGTTCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAG     <  1:4024173/71‑1
                                                          TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGG    >  1:150164/1‑71
                                                          TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAG                           >  1:1321812/1‑48
                                                          TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAA                             >  1:119649/1‑46
                                                           CACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGGT   >  1:2486860/1‑71
                                                            ACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGGTG  >  1:2358342/1‑71
                                                            ACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGGTG  >  1:3324491/1‑71
                                                                                                                                   
GGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  W3110S.gb/2173505‑2173565
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGGTG  <  W3110S.gb/3932933‑3932864

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.