| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 59 (1.180) | 43/102 | NT | 98.3% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 1 (0.020) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
TCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCT > W3110S.gb/2173498‑2173632 | tCAGTCCGGAACAATTTGAAAACAAGAAACTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGt > 1:1745534/1‑70 (MQ=18) cAGTCCGGAACAATTTGAAAACAAGCACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCa > 1:2135269/1‑71 (MQ=21) cAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCa > 1:2029276/1‑71 (MQ=34) aGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCa < 1:2926209/70‑1 (MQ=35) aGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCAt < 1:183960/71‑1 (MQ=35) tCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATcc > 1:4187699/1‑71 (MQ=39) gAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTc > 1:3892373/1‑71 (MQ=255) gAACAATTTGAAAACAAGAACCTCGCTTAGGACTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCtt < 1:3125701/70‑1 (MQ=255) aaTTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTg > 1:1799423/1‑70 (MQ=255) tttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGAt > 1:1374227/1‑71 (MQ=255) tttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGAt > 1:1394076/1‑71 (MQ=255) ttGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGAt > 1:576373/1‑70 (MQ=255) gAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCa < 1:627026/70‑1 (MQ=255) aaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAg > 1:3792260/1‑50 (MQ=32) aaaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAttt < 1:2624434/71‑1 (MQ=255) aaCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtttt < 1:3326974/71‑1 (MQ=255) aCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTg < 1:2087982/71‑1 (MQ=255) aCAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTg < 1:2992037/71‑1 (MQ=255) aaGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTc < 1:2967899/56‑1 (MQ=255) aCCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTgcc < 1:878537/71‑1 (MQ=255) cTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTg < 1:4142213/67‑1 (MQ=255) tCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTc < 1:4241000/41‑1 (MQ=38) tCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAt > 1:1687467/1‑58 (MQ=255) tCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTgccgcc > 1:3692375/1‑71 (MQ=255) cGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCt > 1:4127435/1‑71 (MQ=255) cGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCt > 1:3250431/1‑71 (MQ=255) aGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTgcgc > 1:3472154/1‑70 (MQ=255) gCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGAt < 1:2962502/47‑1 (MQ=255) cTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGAt < 1:2284742/45‑1 (MQ=255) tgtCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGt < 1:1912807/71‑1 (MQ=255) gtCCATATTACGTGGGTAGGATCAGTCATCCCTTCg < 1:114952/36‑1 (MQ=255) gtCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTg > 1:778944/1‑48 (MQ=255) tCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCAtt < 1:2825681/44‑1 (MQ=255) tCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTg > 1:2785487/1‑58 (MQ=255) cATATTACGTGGGTAGGATCAGTCATCCCTTCGTgg > 1:1045418/1‑36 (MQ=255) cATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACt > 1:3016521/1‑48 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGTCTGCCGCCTGCGCTATTCTGTTTTTTg < 1:4279960/71‑1 (MQ=255) tatTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTg > 1:2302963/1‑71 (MQ=255) atTACGTGGGTAGGATCAGTCATCCCTTCGTGGATc > 1:1984749/1‑36 (MQ=255) atTACGTGGGTAGGATCAGTCATCCCTTCGTGGATc > 1:2207822/1‑36 (MQ=255) atTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTgg > 1:820915/1‑71 (MQ=255) ttACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTgg < 1:4362170/70‑1 (MQ=255) gTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGgcgcgc < 1:1543028/71‑1 (MQ=255) tAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCg < 1:809419/71‑1 (MQ=255) ggATCAGTCATCCCTTCGTGGATCATTTTGACTgc > 1:3456763/1‑35 (MQ=255) ggATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAg > 1:4451324/1‑71 (MQ=255) tCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTa < 1:1496651/43‑1 (MQ=255) tCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTTTTTTTTGGCGCGCTGGCGAGCt < 1:23074/70‑1 (MQ=255) | TCAGTCCGGAACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCAGTCATCCCTTCGTGGATCATTTTGACTGCCGCCTGCGCTATTCTGTTTTTTGGCGCGCTGGCGAGCT > W3110S.gb/2173498‑2173632 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |