| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | W3110S.gb | = 2173565 | NA (NA) | 59 (1.180) | 43/102 | NT | 98.3% | pseudogene (306/2041 nt) pseudogene (306/339 nt) |
gatR gatR |
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498 DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090 |
| ? | W3110S.gb | = 3932933 | 1 (0.020) | coding (222/1608 nt) | dppA | dipeptide transporter | |||||
Only 100 of 137 total aligned reads displayed.
CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAA > W3110S.gb/3932864‑3933001 | cACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGt > 1:2358342‑M2/1‑70 (MQ=255) aCCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtg > 1:2486860‑M2/1‑69 (MQ=255) gtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATc > 1:452658‑M2/65‑71 (MQ=255) ccTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtga > 1:150164‑M2/1‑68 (MQ=255) gagtcacctctgactgagagtttactcgcttagccgcgtgtccactattgctgggtaagatcAGTGATccc > 1:4408178‑M2/63‑71 (MQ=255) agtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCg > 1:2403528‑M2/62‑71 (MQ=255) tGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc < 1:1121173‑M2/70‑7 (MQ=255) gtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCgg < 1:294728‑M2/11‑1 (MQ=255) acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGcc < 1:4232874‑M2/14‑1 (MQ=255) ctctTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccac > 1:2843682‑M2/1‑58 (MQ=255) tctTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccac < 1:1546727‑M2/70‑14 (MQ=255) ctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATc > 1:3315918‑M2/54‑60 (MQ=255) ttCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcc < 1:236785‑M2/61‑7 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCg > 1:1865652‑M2/51‑60 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCt < 1:2491619‑M2/19‑1 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTg > 1:3680138‑M2/51‑70 (MQ=255) actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTg < 1:2029719‑M2/20‑1 (MQ=255) ccGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaa < 1:2764816‑M2/70‑18 (MQ=255) cGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcct > 1:2588042‑M2/1‑52 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGaaa < 1:300645‑M2/23‑1 (MQ=255) agagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAg > 1:25334‑M2/47‑71 (MQ=255) gagtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATcc > 1:2826913‑M2/46‑53 (MQ=255) ccGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga < 1:1022710‑M2/71‑24 (MQ=255) gtttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTgg < 1:1303129‑M2/28‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:1284522‑M2/29‑1 (MQ=255) tttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg < 1:3045855‑M2/29‑1 (MQ=255) gCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggaca > 1:1120597‑M2/1‑46 (MQ=255) gCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctac < 1:2875212‑M2/55‑10 (MQ=255) ttactcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTggg > 1:794531‑M2/42‑70 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTg > 1:4533195/1‑45 (MQ=255) cTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgta < 1:3538307‑M2/61‑17 (MQ=255) tttATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacac > 1:1036184‑M2/1‑44 (MQ=255) tataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTg < 1:2098698/42‑1 (MQ=255) tataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacag > 1:3962326‑M2/1‑42 (MQ=255) ctcacttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGt < 1:3869088‑M2/33‑1 (MQ=255) ataACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacagg < 1:610455‑M2/70‑30 (MQ=255) taACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTc > 1:222121/1‑70 (MQ=255) acttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAg > 1:2367209‑M2/36‑71 (MQ=255) cttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCa < 1:1305451‑M2/35‑1 (MQ=255) ttagccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTc < 1:4424166‑M2/16‑1 (MQ=255) ccGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatccta < 1:1966833‑M2/45‑9 (MQ=255) gTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:4068011‑M2/1‑35 (MQ=255) gTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc > 1:236141‑M2/1‑35 (MQ=255) agccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCg > 1:2673794‑M2/32‑69 (MQ=255) tCTGGTTGAATTTAAAATCGGGACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc < 1:3317048‑M2/70‑37 (MQ=255) gccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCt > 1:1840189‑M2/31‑45 (MQ=255) gccgcgtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGaa < 1:2759823‑M2/40‑1 (MQ=255) cTGGTTTAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatgga < 1:600439‑M2/56‑24 (MQ=255) cTGGTTGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagc < 1:3595792‑M2/69‑37 (MQ=255) tGGTTGAATTTAAAATAGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgag < 1:4488083‑M2/71‑40 (MQ=255) gcgtgtccactattgctgggtaagatcAGTGATccc > 1:2194112‑M2/28‑36 (MQ=255) ttGAATTTAAAATCGGCACCACCGAAGTGtgatcc > 1:2764052‑M2/1‑29 (MQ=255) gtgtccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACgg > 1:4034399‑M2/26‑70 (MQ=255) tGAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaag < 1:2817078‑M2/63‑36 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaag < 1:2057123‑M2/62‑36 (MQ=255) gAATTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggac < 1:2130573‑M2/51‑25 (MQ=255) aaTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttctt > 1:3260976‑M2/1‑26 (MQ=255) ccactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaaaa > 1:4609657‑M2/22‑71 (MQ=255) aTTTAAAATCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttg > 1:1584695‑M2/1‑25 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTc > 1:1245728‑M2/21‑36 (MQ=255) cactattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTg < 1:1251354‑M2/27‑1 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAAcc > 1:4008529‑M2/19‑70 (MQ=255) ctattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCt < 1:1372631‑M2/53‑1 (MQ=255) tattgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTc > 1:3686481‑M2/18‑51 (MQ=255) aaaaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtttt < 1:1812044‑M2/71‑51 (MQ=255) aaaaTCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:4466201‑M2/40‑20 (MQ=255) aaaaTCGGCACCACCGAAGTGtgatcctacccacgtaata < 1:1576023‑M2/40‑20 (MQ=255) attgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:1372435‑M2/17‑70 (MQ=255) attgctgggtaagatcAGTCATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta > 1:2902048‑M2/17‑70 (MQ=255) aaaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtttt < 1:1366309‑M2/70‑51 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta < 1:507815‑M2/54‑1 (MQ=255) ttgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCta < 1:101172‑M2/54‑1 (MQ=255) aaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttca > 1:2247197‑M2/1‑19 (MQ=255) aaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttca > 1:2373856‑M2/1‑19 (MQ=255) aaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgtt < 1:2969231‑M2/67‑49 (MQ=255) aaTCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcg > 1:4555267‑M2/1‑19 (MQ=255) tgctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATAc > 1:1702395‑M2/15‑71 (MQ=255) tCGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaa > 1:2962431‑M2/1‑17 (MQ=255) ctgggtaagatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa < 1:879740‑M2/48‑1 (MQ=255) cGGCACCACCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaat < 1:4605177‑M2/71‑56 (MQ=255) caccacCGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgt < 1:437444‑M2/71‑59 (MQ=255) caccacCGAAGTGtgatcctacccacgtaatatggacacaggc > 1:1189534‑M2/1‑13 (MQ=255) accaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgtt > 1:2482495‑M2/1‑12 (MQ=255) accaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgtt > 1:2235676‑M2/1‑12 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttc < 1:2721419‑M2/71‑61 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttc < 1:739234‑M2/71‑61 (MQ=255) ccaccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgagg < 1:3179806‑M2/51‑41 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttcc < 1:842586‑M2/71‑62 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaag < 1:3942725‑M2/45‑36 (MQ=255) caccGAAGTGtgatcctacccacgtaatatggacacaggcctaag < 1:3829913‑M2/45‑36 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCt > 1:3004839‑M2/6‑71 (MQ=255) agatcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCt > 1:1737706‑M2/6‑71 (MQ=255) tcAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCAt > 1:2112664‑M2/3‑66 (MQ=255) tcAGTGATCCCGGGCCTCGATGAAACGTGGGAAGTCAGCg < 1:3119029‑M2/38‑1 (MQ=255) cAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCt < 1:221242‑M2/66‑1 (MQ=255) aGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTa < 1:3484417/71‑1 (MQ=255) gTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTaa < 1:1978453/47‑1 (MQ=255) gTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTaa < 1:224492/71‑1 (MQ=255) tGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGa < 1:814038/40‑1 (MQ=255) tGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCt < 1:3923054/64‑1 (MQ=255) | CACCTATGACGCCTCTTCCGTCCCGCTTTATAACCGTCTGGTTGAATTTAAAATCGGCACCACCGAAGTGATCCCGGGCCTCGCTGAAAAGTGGGAAGTCAGCGAAGACGGTAAAACCTATACCTTCCATCTGCGTAA > W3110S.gb/3932864‑3933001 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |